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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Neem_11956_f_2 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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| Family | C2H2 | ||||||||
| Protein Properties | Length: 168aa MW: 18815 Da PI: 5.3032 | ||||||||
| Description | C2H2 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-C2H2 | 15.5 | 5.1e-05 | 35 | 57 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+ Cp C+k F++ L H++ H
Neem_11956_f_2 35 FICPRCSKAFPTTQALGGHQNAH 57
89******************988 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF57667 | 7.37E-7 | 31 | 62 | No hit | No description |
| Gene3D | G3DSA:3.30.160.60 | 2.4E-4 | 33 | 61 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
| Pfam | PF13912 | 2.9E-8 | 35 | 59 | IPR007087 | Zinc finger, C2H2 |
| PROSITE profile | PS50157 | 11.572 | 35 | 62 | IPR007087 | Zinc finger, C2H2 |
| PROSITE pattern | PS00028 | 0 | 37 | 57 | IPR007087 | Zinc finger, C2H2 |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003676 | Molecular Function | nucleic acid binding | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 168 aa Download sequence Send to blast |
MYTINLLGGF ESADHHSSAT VENLRQFSIV DSNPFICPRC SKAFPTTQAL GGHQNAHRRE 60 RNEEQWTSWE ERRKKARELL IQKSKPPGDG RIIDFWAKDL AKTTDSSSGG PVPNEKFMGN 120 GEMGEFVGRD FLAMVAGDGG DGWLEDFPVD YRAHEITSTV ELDLTLKL |
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM19978 | 4 | 5 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G06650.1 | 5e-10 | C2H2 family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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