PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11875_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family LBD
Protein Properties Length: 190aa    MW: 21428.2 Da    PI: 8.0422
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11875_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260131.34e-41131121100
          DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 
                     +CaaCk+lrr+Ca++C+lapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+v+eA+ar+r+PvyG++g i+ lq+q  +l+ae+a
  Neem_11875_f_3  13 PCAACKILRRRCAEKCILAPYFPPTEPHKFIIAHRVFGASNIIKFLQELPENQRADAVSSMVFEANARIRNPVYGCAGAISLLQKQAIELQAEVA 107
                     7********************************************************************************************** PP

          DUF260  96 llkee 100
                     ++++e
  Neem_11875_f_3 108 KAQAE 112
                     *9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.79412113IPR004883Lateral organ boundaries, LOB
PfamPF031951.1E-4013110IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MQTSSSPPIV LSPCAACKIL RRRCAEKCIL APYFPPTEPH KFIIAHRVFG ASNIIKFLQE  60
LPENQRADAV SSMVFEANAR IRNPVYGCAG AISLLQKQAI ELQAEVAKAQ AELVSMQFEQ  120
KNLIALICME MTAQSDQDHS MNMFRLYDLG SSLDMKMVMF DRYLAREEFQ KRLVLSSYMN  180
GLCPFPILIS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A5e-4281146112LOB family transfactor Ramosa2.1
5ly0_B5e-4281146112LOB family transfactor Ramosa2.1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028775843.11e-73LOB domain-containing protein 1-like
RefseqXP_028808060.11e-73LOB domain-containing protein 1-like
SwissprotQ9LQR04e-68LBD1_ARATH; LOB domain-containing protein 1
TrEMBLA0A251NML02e-71A0A251NML0_PRUPE; Uncharacterized protein
TrEMBLM5W0702e-71M5W070_PRUPE; Uncharacterized protein
TrEMBLV4VB109e-72V4VB10_9ROSI; Uncharacterized protein (Fragment)
STRINGEMJ071093e-72(Prunus persica)
STRINGXP_006436214.11e-72(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114128105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07900.12e-70LOB domain-containing protein 1