PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_11793_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | TCP | ||||||||
Protein Properties | Length: 195aa MW: 21157.8 Da PI: 5.6565 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 119.3 | 4.8e-37 | 89 | 161 | 1 | 73 |
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec 73 +a+k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ Neem_11793_f_1 89 PAPKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAM 161 589**************************************************************88887433 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.6E-30 | 95 | 168 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 27.141 | 96 | 150 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MDNVQKQEIE EDEDARTTVD LRINCAENAE LENNYYTKVD PTSNSPTTPP VAPKEEPETE 60 ERSAQSLGIM PLAVHVPAAI PLPLSAAPPA PKRASTKDRH TKVEGRGRRI RMPATCAARI 120 FQLTRELGHK SDGETIRWLL EHAEPAIIAA TGTGTVPAIA MSVNGTLKIP TTTNASSEPG 180 DQHFGLVWLG TNKFC |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021904289.1 | 4e-90 | transcription factor TCP9 | ||||
Swissprot | O64647 | 3e-56 | TCP9_ARATH; Transcription factor TCP9 | ||||
TrEMBL | A0A2C9WRV6 | 1e-83 | A0A2C9WRV6_MANES; Uncharacterized protein | ||||
STRING | evm.model.supercontig_18.176 | 2e-89 | (Carica papaya) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9831 | 24 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45680.1 | 3e-53 | TCP family protein |