PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11770_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 1184aa    MW: 130955 Da    PI: 8.1579
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11770_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_130.11.1e-09110150545
                     CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 
                     k  rr+++NReAAr+sR+RKka++++Le    +L++  ++L
  Neem_11770_f_1 110 KTLRRLAQNREAARKSRLRKKAYVQQLESSRLKLTQLEQEL 150
                     788*************************9777776666554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1704.2E-799153No hitNo description
SMARTSM003382.7E-9106169IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.415108152IPR004827Basic-leucine zipper domain
PfamPF001708.6E-7110150IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.67E-6110153No hitNo description
CDDcd147081.25E-24110162No hitNo description
PROSITE patternPS000360113128IPR004827Basic-leucine zipper domain
PfamPF141446.2E-30192267IPR025422Transcription factor TGA like domain
Gene3DG3DSA:3.30.565.107.1E-83436672IPR003594Histidine kinase-like ATPase, C-terminal domain
PRINTSPR011591.9E-14436446IPR000565DNA topoisomerase, type IIA, subunit B
SuperFamilySSF558745.11E-60436669IPR003594Histidine kinase-like ATPase, C-terminal domain
SMARTSM003873.1E-26461611IPR003594Histidine kinase-like ATPase, C-terminal domain
PfamPF025182.1E-23463610IPR003594Histidine kinase-like ATPase, C-terminal domain
SMARTSM004337.2E-2634651175IPR001241DNA topoisomerase, type IIA
PRINTSPR004184.0E-50465480IPR001241DNA topoisomerase, type IIA
CDDcd000757.77E-11466607No hitNo description
PRINTSPR004184.0E-50500513IPR001241DNA topoisomerase, type IIA
PRINTSPR004184.0E-50545559IPR001241DNA topoisomerase, type IIA
PRINTSPR011591.9E-14680702IPR000565DNA topoisomerase, type IIA, subunit B
CDDcd008222.20E-57752896No hitNo description
Gene3DG3DSA:3.30.230.102.6E-55757916IPR014721Ribosomal protein S5 domain 2-type fold, subgroup
PfamPF002047.5E-50760915IPR013506DNA topoisomerase, type IIA, subunit B, domain 2
SuperFamilySSF542111.9E-44762916IPR020568Ribosomal protein S5 domain 2-type fold
SuperFamilySSF567192.09E-789221177IPR013760DNA topoisomerase, type IIA-like domain
Gene3DG3DSA:3.40.50.6707.6E-849651163IPR013759DNA topoisomerase, type IIA, central domain
PROSITE profilePS5088018.0339651080IPR006171Toprim domain
PfamPF017513.3E-199661067IPR006171Toprim domain
CDDcd033666.08E-729661079No hitNo description
PROSITE patternPS001770969977IPR018522DNA topoisomerase, type IIA, conserved site
PRINTSPR011591.9E-1410171026IPR000565DNA topoisomerase, type IIA, subunit B
PRINTSPR004184.0E-5010341050IPR001241DNA topoisomerase, type IIA
PRINTSPR004184.0E-5010521069IPR001241DNA topoisomerase, type IIA
PRINTSPR004184.0E-5010721084IPR001241DNA topoisomerase, type IIA
PfamPF009862.2E-2311101171IPR002288DNA gyrase B subunit, C-terminal
PRINTSPR004184.0E-5011141130IPR001241DNA topoisomerase, type IIA
PRINTSPR011591.9E-1411351147IPR000565DNA topoisomerase, type IIA, subunit B
PRINTSPR011591.9E-1411511167IPR000565DNA topoisomerase, type IIA, subunit B
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006265Biological ProcessDNA topological change
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005739Cellular Componentmitochondrion
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003918Molecular FunctionDNA topoisomerase type II (ATP-hydrolyzing) activity
GO:0005524Molecular FunctionATP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1184 aa     Download sequence    Send to blast
MKTGSQAMGT DVQFGTLSKT LASSDINLPA AIVGSQALSL QKDPQSNLIS VSSGHRENWG  60
ESNMAEASPR TDTSTDDTED KSQKFERGQS TAVVASDSSD KSKEKSGDQK TLRRLAQNRE  120
AARKSRLRKK AYVQQLESSR LKLTQLEQEL QRARQQGIFI SSSGDQSHSM SGNGAAAFDV  180
EYSRWLEEHN RHINELRAAV NSHAGDTELR TIVDNVTTQF DEIFRLKGIA AKADVFHILS  240
GMWKTPAERC FMWIGGFRSS ELLKLLVNQL EPLTEQQLVA IYNLQQSSQQ AEDALSQGMD  300
ALQQSLAETL ANGSPSPSGS SGNVANYMGQ MAMAMGKLGT LEGFLRQNIS ANNLGYNSNA  360
KNLYNNNDFT RKGKTAFDHD TFTRNKRGLL MTRINFPLRR ISSQILIRNN VVSPRAFMAS  420
GIATEAFKGS PTSKTYGSEQ IQVLEGLEAV RKRPAMYIGS TGPRGLHHLV YEILDNAVDE  480
AQAGYASNIE VALLPDNSVS ITDNGRGIPT DLHLVTNKSA LETVLTVLHA GGKFGGSSSG  540
YSVSGGLHGV GLSVVNALSE ALEVTVWRDG MESQQKYSRG KPVTTLTRHV LPADSKNHQG  600
TRIRFWPDEE EDTSSTGDQR FLCLLSHCHL VFTTAIQFDY NTIAGRIREL AFLNPKLTIT  660
LTKEDSDPEK NQHNEYFFAG GLVEYVQWLN IDKIKGRGEH SMTLLTTDSL VSFSVSNNNV  720
EPKPSLAYKV FVGWKSQGKT KFSLIREKEK WQIATAASKP LHDVVGFRKE VDGMTIDLAL  780
QWCSDAYSDT ILGYANSIRT IDGGTHIDGV KSSLTRTLNS LVKKSKIVKD KDISLSGEHV  840
REGLTCIISV KVPNPEFEGQ TKTRLGNPEV RKVVDQSVQE FLTEYLELHP HVLDSILSKS  900
LSALKAALAA KRARDLVRQK GVLRSSSLPG KLADCSSTNP EESGIRLIER FGNGGRGFDL  960
LKVCEEIFIV EGDSAGGSAK QGRDRRFQAI LPLRGKILNV ERKDEAAMYK NEEIQNLIRA  1020
LGLGVKGEDF KKEALRYHKI IILTDADVDG AHIRTLLLTF FYRYQKALFD EGCIYVGVPP  1080
LYKVERGKQV HYCYDDAELK KLQSSFPSNA SYNIQRFKGL GEMMPVQLWE TTLDPEQRLI  1140
KQLVIEDAAE ANVVFSSLMG ARVDTRKELI QNSANLINLD QLDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4juo_C1e-100436117634662DNA topoisomerase 4 subunit B
6gau_A2e-97436118413679DNA gyrase subunit B,DNA gyrase subunit A
6gau_B2e-97436118413679DNA gyrase subunit B,DNA gyrase subunit A
6gav_A2e-97436118413679DNA gyrase subunit B,DNA gyrase subunit A
6gav_B2e-97436118413679DNA gyrase subunit B,DNA gyrase subunit A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtSeems to play a critical role in chloroplast nucleoid partitioning by regulating DNA topology. A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner. {ECO:0000269|PubMed:15367714}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018476288.10.0PREDICTED: DNA gyrase subunit B, mitochondrial-like
SwissprotQ5YLB40.0GYRB_NICBE; DNA gyrase subunit B, chloroplastic/mitochondrial
TrEMBLA0A2P5BIM60.0A0A2P5BIM6_TREOI; DNA topoisomerase 2
TrEMBLA0A4P1R6I40.0A0A4P1R6I4_LUPAN; Uncharacterized protein
STRINGXP_010087265.10.0(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06950.41e-105bZIP family protein
Publications ? help Back to Top
  1. Cho HS, et al.
    DNA gyrase is involved in chloroplast nucleoid partitioning.
    Plant Cell, 2004. 16(10): p. 2665-82
    [PMID:15367714]