PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_11769_f_4

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Trihelix

Protein Properties

Length: 531aa MW: 60072.9 Da PI: 9.8873

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_11769_f_4	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	65.5	1.1e-20	103	190	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++e+laLi+a+ ++ +l+rg+l+ +W++vs+++ ++ g ++s++qC++k+e+l+kry+++k+++ + + s++ +f l+ Neem_11769_f_4 103 CWTHDETLALINAYGARWLSLNRGNLRTSDWDAVSSAVsdSSPGASKSSIQCRHKIEKLRKRYRAEKQRSLSSPGRFISSWDLFPLLD 190 8***********************************888889***********************9998888899999998776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	5.4E-21	102	192	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 531 aa Download sequence Send to blast
MNPEPITYVS AHVTHPQRIL AYFPPPVSRL RLRPHPNPAL PLTFPQATIE NDNNHQYHLF 60 LPLFLFFSAK LRLPIRYFAH SSAVTSIMST PTTTTTKRVP PPCWTHDETL ALINAYGARW 120 LSLNRGNLRT SDWDAVSSAV SDSSPGASKS SIQCRHKIEK LRKRYRAEKQ RSLSSPGRFI 180 SSWDLFPLLD SMNFGSSSAA GLSNQSRDFS DQKIMDATEV RLNKNLATKY DNKIDGDFNQ 240 DFGLKRDLRS GFVRNYGNID FDDDFGGLAS RAKDYVKIAG DLKSNIGSDR DFRFGYGVKA 300 EDGRNFVSPQ GFRLKSYRKT DDDNSSLNLD VNGFPVRTFG DRILVTPPGF KPRNYGKINE 360 NFSLDAYYDL NADYEVPSGS GSEFYAKSFG DGDFLPLRTR SKNHGRVDVN LNGSVDCPVM 420 NECGSTSRLR FGNRNGDGGI KRDLDLFEEL ASSMTLLTER FAKMEKMKMK MARETQKMRM 480 EMEMKHNQMI LESQKHLVDI FVSGFVEKKA KKKVKVELMS PNVSGKRDEA Q

Sequence ? help Back to Top

Protein Sequence Length: 531 aa Download sequence Send to blast

MNPEPITYVS AHVTHPQRIL AYFPPPVSRL RLRPHPNPAL PLTFPQATIE NDNNHQYHLF  60
LPLFLFFSAK LRLPIRYFAH SSAVTSIMST PTTTTTKRVP PPCWTHDETL ALINAYGARW  120
LSLNRGNLRT SDWDAVSSAV SDSSPGASKS SIQCRHKIEK LRKRYRAEKQ RSLSSPGRFI  180
SSWDLFPLLD SMNFGSSSAA GLSNQSRDFS DQKIMDATEV RLNKNLATKY DNKIDGDFNQ  240
DFGLKRDLRS GFVRNYGNID FDDDFGGLAS RAKDYVKIAG DLKSNIGSDR DFRFGYGVKA  300
EDGRNFVSPQ GFRLKSYRKT DDDNSSLNLD VNGFPVRTFG DRILVTPPGF KPRNYGKINE  360
NFSLDAYYDL NADYEVPSGS GSEFYAKSFG DGDFLPLRTR SKNHGRVDVN LNGSVDCPVM  420
NECGSTSRLR FGNRNGDGGI KRDLDLFEEL ASSMTLLTER FAKMEKMKMK MARETQKMRM  480
EMEMKHNQMI LESQKHLVDI FVSGFVEKKA KKKVKVELMS PNVSGKRDEA Q

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006440162.1	0.0	uncharacterized protein LOC18049396
Refseq	XP_006477074.1	0.0	protein FIP2
TrEMBL	V4TJ35	0.0	V4TJ35_9ROSI; Uncharacterized protein
STRING	XP_006477074.1	0.0	(Citrus sinensis)
STRING	XP_006440162.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10483	18	28

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-18	Trihelix family protein