PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11596_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 412aa    MW: 46515.7 Da    PI: 7.9808
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11596_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-11344389655
                     HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +++Er RR +i +++ +L+el+P+     +k  + a++L +Av+Y+k+Lq
  Neem_11596_f_1 344 SIAERVRRTKISERMRKLQELVPNM----DKQTNTADMLDLAVDYVKELQ 389
                     689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.939338388IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-15341401IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.71E-11342393No hitNo description
Gene3DG3DSA:4.10.280.103.2E-15343400IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-8344389IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-13344394IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010119Biological Processregulation of stomatal movement
GO:0042335Biological Processcuticle development
GO:0048573Biological Processphotoperiodism, flowering
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MESDLQHQHH FLHDHQPQHH QKQLNSGLSR YQSAPSSYFS SFLDRDFCED FLNRPTSPET  60
ERIFARFLSN ASGNTENNVP DQNLGLIAEN SPVREKIMES EQQMMPQMND QSGIMQQQQQ  120
RNYSSAPKNY YQHQQQQNLQ NQSSEMDYRT MSSVGMDRFP PVKMSGSAGN NSNLIRHSSS  180
PAGLFNNINI ENGYVVMKGM GDYGAGNNIK REASFSTAGR PPTTPSKPMS PISEIGNKSN  240
NAGFSETHSN NFSSGFPIDS WDESSMMSEN MGGVRRLRED DRTLSGLSAA ETQNIDAGNR  300
PPPLLAHHLS LPKDMASFEK LLQFQDSVPC KIRAKRGCAT HPRSIAERVR RTKISERMRK  360
LQELVPNMDK QTNTADMLDL AVDYVKELQK QVKALSDNRA KCTCSREHQQ RP
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00195DAPTransfer from AT1G51140Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007014950.20.0PREDICTED: transcription factor bHLH122 isoform X2
TrEMBLA0A061GZ590.0A0A061GZ59_THECC; DNA binding protein, putative isoform 2
STRINGEOY325680.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM105472632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51140.12e-75bHLH family protein