PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11461_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRF
Protein Properties Length: 232aa    MW: 25368.7 Da    PI: 10.1323
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11461_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC79.92.3e-25131175145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+epgrCrRtDGKkWRCs+++l+++k+CErH+hrgr rsrk +e+
  Neem_11461_f_1 131 DPEPGRCRRTDGKKWRCSKEALPDHKYCERHVHRGRLRSRKLVEA 175
                     79****************************************997 PP
2QLQ38.73e-146196237
             QLQ  2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                     FT  Qlq+L  Q  +yKy+ a++PvP +Ll +i+k
  Neem_11461_f_1 61 GFTILQLQELQLQSVIYKYMQAGLPVPYHLLIPIWK 96
                    58889*****************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.2E-46096IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166619.1826196IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088807.8E-116295IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.995131175IPR014977WRC domain
PfamPF088795.0E-21132174IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MESHNPPPKL ALFADFEIGR TSWSHSCNME SNGGEGSPPI SLGLELELGS GSTVYSKKSS  60
GFTILQLQEL QLQSVIYKYM QAGLPVPYHL LIPIWKSVAS SFNGLNGGIH QLYPSFLGSG  120
GLHRELRSGM DPEPGRCRRT DGKKWRCSKE ALPDHKYCER HVHRGRLRSR KLVEASRRNS  180
ITSSANANTN LSISLPLNNI SSSSSSTPTV SNPSPSFGFS PRTFLPGGIQ KT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440462.11e-102growth-regulating factor 10
TrEMBLA0A2H5NUD91e-101A0A2H5NUD9_CITUN; Uncharacterized protein
STRINGXP_006440462.11e-101(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16724712
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.15e-34growth-regulating factor 2