PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_11446_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Trihelix

Protein Properties

Length: 365aa MW: 41591 Da PI: 8.1096

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_11446_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	85.4	6.8e-27	122	217	1	84
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v++Li+a+++++e+ + ++ +kk++W+++sk+m+ergf++sp+qC++k+++lnkryk+++++ +++ +++++++ +++d Neem_11446_f_1 122 KWTDKMVKLLINAVSYVGEDTSLDCgggarrkfavlQKKGKWKAISKVMAERGFHVSPQQCEDKFNDLNKRYKRLNDMLGRGtSCQVVENPALLD 216 7*******************98888888999999********************************************5689988888776 PP trihelix 84 q 84 Neem_11446_f_1 217 V 217 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	9.8E-23	120	210	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 365 aa Download sequence Send to blast
MEGNLSPGGM IPGGPSFGGL DLQGSMRVHH QAQHHPHPMH QHHHTIPRQG SAIHPSVHKG 60 FPLTIGSMQS CDQTLSMTDY NKGERGKNSV SDDDDPSFAE EGGEGHNDAG KGKKGSPWQR 120 VKWTDKMVKL LINAVSYVGE DTSLDCGGGA RRKFAVLQKK GKWKAISKVM AERGFHVSPQ 180 QCEDKFNDLN KRYKRLNDML GRGTSCQVVE NPALLDVIDF LTEKEKDDVR KILSSKHLFY 240 EEMLRQGQAH EDVCLGNSMN PQDFSKSSCS HPQVGQGDMN QAESMRAAWL QKQWIESRSL 300 QLEEQKLQIQ VEMLELEKQR FKWQRFCKKR DRELEKSRME NERMKLENER MALELKQKEM 360 SADYS

Sequence ? help Back to Top

Protein Sequence Length: 365 aa Download sequence Send to blast

MEGNLSPGGM IPGGPSFGGL DLQGSMRVHH QAQHHPHPMH QHHHTIPRQG SAIHPSVHKG  60
FPLTIGSMQS CDQTLSMTDY NKGERGKNSV SDDDDPSFAE EGGEGHNDAG KGKKGSPWQR  120
VKWTDKMVKL LINAVSYVGE DTSLDCGGGA RRKFAVLQKK GKWKAISKVM AERGFHVSPQ  180
QCEDKFNDLN KRYKRLNDML GRGTSCQVVE NPALLDVIDF LTEKEKDDVR KILSSKHLFY  240
EEMLRQGQAH EDVCLGNSMN PQDFSKSSCS HPQVGQGDMN QAESMRAAWL QKQWIESRSL  300
QLEEQKLQIQ VEMLELEKQR FKWQRFCKKR DRELEKSRME NERMKLENER MALELKQKEM  360
SADYS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006434454.1	1e-153	uncharacterized protein LOC18041979
Refseq	XP_006473052.1	1e-153	uncharacterized protein LOC102612442
TrEMBL	A0A2P5YI90	0.0	A0A2P5YI90_GOSBA; Uncharacterized protein
STRING	POPTR_0005s21390.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5042	27	52

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G76870.1	1e-103