PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_11358_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GRAS

Protein Properties

Length: 672aa MW: 74483.8 Da PI: 5.8864

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_11358_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	413.6	1.8e-126	285	656	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 lv+lL++c+ea+ s++ +++++++rl +lasp+g+p+ Rl+ay+teALa r++r +++++++ pp++ + + +++ +al+l+++v+Pi+kf h Neem_11358_f_1 285 LVRLLTACVEAIGSRNIPAINNIISRLGDLASPRGSPISRLTAYYTEALALRVTRLWPHTFHISPPRDLD-RIDDDSGTALRLLNQVTPIPKFIH 378 6899********************************************************99999997.5678888999********** PP GRAS 96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190 +taN+ +l+a+eg++rvHiiDfdi+qGlQWp+++q+LasR+++p ++RiTg+g+ sk+el+etg+rL+ fAe+l++pfef++ v++rled++ Neem_11358_f_1 379 FTANEILLRAFEGKDRVHIIDFDIKQGLQWPSFFQSLASRTNPPSHVRITGIGE----SKQELNETGDRLSGFAEALNLPFEFHP-VVDRLEDVR 468 **************************************************....***********************.7**** PP GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikv 285 l++L+vk++E++aVn+++qlh++l +++ + +++L l++s++P+vv ++eqea+hns+ F +r++++l+yysalfd ++ +lp +s +rik+ Neem_11358_f_1 469 LWMLHVKEKENVAVNCIFQLHKTLY-TGNGG-ALRDFLGLIRSTNPTVVLMAEQEAEHNSPFFETRVSNSLRYYSALFDLMDYSLPLDSPARIKI 561 *******************93.33333.4789********************************************************* PP GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee........sgslvlgWkdrpLvsvSa 372 E+ ++rei+++vaceg++r erhe++ +Wr+++e+ GF+ v ++e+++ q ++ll++++ + y v+++ ++l+l W d+pL++vS Neem_11358_f_1 562 EEL-FAREIRSIVACEGSDRLERHESFDNWRKMMEQGGFRCVGIREREVLQSQMLLKMYSCENYGVKKQqqgqqdgeGAALTLSWLDQPLYTVSG 655 98.*****************************************************88899776777777455667************* PP GRAS 373 W 373 W Neem_11358_f_1 656 W 656 * PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.473	259	629	IPR005202	Transcription factor GRAS
Pfam	PF03514	6.2E-124	285	656	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 672 aa Download sequence Send to blast
MLAGCSSSTL LSPRHRLRSE ASAQFPACHF QLPSMSTQRL DLPCSFSRKE SSRSQPMRPV 60 GLSVEKPIES KTSTCSLKQN IRLPPLATST QREIKDEFWG KGKSLKRFAE GVVDESCINR 120 AKRKKGSTDD TNDGKNDDIC EGGGDTLSLG QFGSGNFWFQ PTFTGQNVPP VPFTLTCSGE 180 EDRVCFVPSD LISPPLPLSN NPWVESVITE ITDVGEKDAG DTSRGLAKEV SASSTSSESQ 240 SLALKLHENP VEHEVGNGSN NPHPHQGGVE AAEEANQGGN QGFELVRLLT ACVEAIGSRN 300 IPAINNIISR LGDLASPRGS PISRLTAYYT EALALRVTRL WPHTFHISPP RDLDRIDDDS 360 GTALRLLNQV TPIPKFIHFT ANEILLRAFE GKDRVHIIDF DIKQGLQWPS FFQSLASRTN 420 PPSHVRITGI GESKQELNET GDRLSGFAEA LNLPFEFHPV VDRLEDVRLW MLHVKEKENV 480 AVNCIFQLHK TLYTGNGGAL RDFLGLIRST NPTVVLMAEQ EAEHNSPFFE TRVSNSLRYY 540 SALFDLMDYS LPLDSPARIK IEELFAREIR SIVACEGSDR LERHESFDNW RKMMEQGGFR 600 CVGIREREVL QSQMLLKMYS CENYGVKKQQ QGQQDGEGAA LTLSWLDQPL YTVSGWAPVD 660 VAGSSSSFSQ PS

Sequence ? help Back to Top

Protein Sequence Length: 672 aa Download sequence Send to blast

MLAGCSSSTL LSPRHRLRSE ASAQFPACHF QLPSMSTQRL DLPCSFSRKE SSRSQPMRPV  60
GLSVEKPIES KTSTCSLKQN IRLPPLATST QREIKDEFWG KGKSLKRFAE GVVDESCINR  120
AKRKKGSTDD TNDGKNDDIC EGGGDTLSLG QFGSGNFWFQ PTFTGQNVPP VPFTLTCSGE  180
EDRVCFVPSD LISPPLPLSN NPWVESVITE ITDVGEKDAG DTSRGLAKEV SASSTSSESQ  240
SLALKLHENP VEHEVGNGSN NPHPHQGGVE AAEEANQGGN QGFELVRLLT ACVEAIGSRN  300
IPAINNIISR LGDLASPRGS PISRLTAYYT EALALRVTRL WPHTFHISPP RDLDRIDDDS  360
GTALRLLNQV TPIPKFIHFT ANEILLRAFE GKDRVHIIDF DIKQGLQWPS FFQSLASRTN  420
PPSHVRITGI GESKQELNET GDRLSGFAEA LNLPFEFHPV VDRLEDVRLW MLHVKEKENV  480
AVNCIFQLHK TLYTGNGGAL RDFLGLIRST NPTVVLMAEQ EAEHNSPFFE TRVSNSLRYY  540
SALFDLMDYS LPLDSPARIK IEELFAREIR SIVACEGSDR LERHESFDNW RKMMEQGGFR  600
CVGIREREVL QSQMLLKMYS CENYGVKKQQ QGQQDGEGAA LTLSWLDQPL YTVSGWAPVD  660
VAGSSSSFSQ PS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	4e-67	292	658	25	379	Protein SCARECROW
5b3h_D	4e-67	292	658	25	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006477403.1	0.0	scarecrow-like protein 28
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	A0A067F839	0.0	A0A067F839_CITSI; Uncharacterized protein
STRING	XP_006477403.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7296	27	43

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein