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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_11290_f_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 217aa MW: 24948 Da PI: 10.2907 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 51.1 | 1.7e-16 | 10 | 51 | 2 | 43 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43 +i + r tf kR+ ++KK +E S+LCd+ev++ii++++ Neem_11290_f_2 10 PIRHDKARLATFKKRKGSLMKKVHEFSTLCDVEVCIIIYGPK 51 5777889999******************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.101 | 1 | 51 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.6E-8 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-7 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 9.78E-16 | 7 | 50 | No hit | No description |
SuperFamily | SSF55455 | 4.84E-17 | 7 | 80 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.7E-17 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-7 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.2E-7 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
MDSQPHKLEP IRHDKARLAT FKKRKGSLMK KVHEFSTLCD VEVCIIIYGP KLKNLPVKAE 60 TWASREGKLI DIIRKYKKAA TTADDVQRRS TLSLSKVGKN KTPQVEDDDA TRLRKKKCVA 120 KYTTWDQRMD NFTEDQLKMV IDTMDHKLKL VDKKLNMFRG GRKVMKKAAS LKLLDHDYSH 180 LDADTHQKHD AKPLNLELTI GLLPHHQVSP ELPSDLS |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006430718.1 | 6e-71 | agamous-like MADS-box protein AGL82 | ||||
Refseq | XP_024037550.1 | 6e-71 | agamous-like MADS-box protein AGL82 | ||||
TrEMBL | V4S8X5 | 1e-69 | V4S8X5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006482193.1 | 2e-70 | (Citrus sinensis) | ||||
STRING | XP_006430718.1 | 2e-70 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM21055 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58890.1 | 2e-25 | AGAMOUS-like 82 |