PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Neem_11279_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Nin-like

Protein Properties

Length: 946aa MW: 104602 Da PI: 6.9007

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_11279_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	91.6	5.9e-29	626	676	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek+isl++l++yF++++kdAAk++gvc+T+LKriCRq+GI RWP+Rkik++ Neem_11279_f_2 626 EKTISLQVLRQYFAGSLKDAAKSIGVCPTTLKRICRQHGITRWPSRKIKKV 676 799**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.507	615	696	IPR003035	RWP-RK domain
Pfam	PF02042	9.9E-25	628	676	IPR003035	RWP-RK domain
SuperFamily	SSF54277	8.72E-24	847	933	No hit	No description
SMART	SM00666	1.8E-26	848	931	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	5.2E-24	848	928	No hit	No description
PROSITE profile	PS51745	25.101	848	931	IPR000270	PB1 domain
Pfam	PF00564	5.3E-19	849	930	IPR000270	PB1 domain
CDD	cd06407	9.50E-45	849	929	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 946 aa Download sequence Send to blast
MDDGNFTSIS TFGACPGTAM DLDFMDELLY DGCWLETTDS FDFLQSGPSR SGPVDDSSQY 60 LPYSDGNSGN LSMNLNPHQQ VYQDETKRRV TENPSLVYPK IEELHETHIQ NHQGFDPTSS 120 SGQSGNLLIQ GNELGRRWWI APRANTGSSS SVKERLVCAI AHLKEYIKDG NTLVQIWVPV 180 KKGGKHVLTT NEQPYSLDPS CKSLESYRNV STTYHFAVDE DSKEFDGLPG RVFLGKLPEW 240 TPDVRFFRSD EYRRVNYAQQ YDVHGSLALP VFERGSGTCL GVVEIVTTSQ KIQYRPDLEN 300 VCKALEAVDL RSSENFSNSC VKAHNKLNHT AMPELAEVLR SVCKTHNLPL ALTWAPCGQQ 360 GKGGCVRSDE NYAHCFLTVD SACFVANQKF SNFLVACSEH QLFQGQGIVG KAFTLRKQCF 420 AADITAFSKS NYPLSHHARM FDLHAAIAIP LQGISTGMIE FVLEFFLPKD CQDTEEQKRT 480 VNSLSVVIRQ LCESLPLAME NELEEVLLPI GEMGVTSDSS SPSKGTSPEQ SSWISHMIET 540 QQKGKGIAVS WECQKEEPKE EFNVMTGWYD AQADSYHKQL FPGFCQFQQN SGAKTSVEDG 600 GDSSSLGGRH PVGSRKAGEK RRTKTEKTIS LQVLRQYFAG SLKDAAKSIG VCPTTLKRIC 660 RQHGITRWPS RKIKKVGHSL RKLQLVIDSV QGAEGAIQIG SFYTSFPELS SPNFSGNDPF 720 SSVKTGDRLK PSNLQPDNGF FGTGAAVSKS PSSSCSQSSG SSTCCSTGAK QNIATVNALS 780 SGEAQMVEES GGVLKRAHSH AELHALNQEE PKLLPRSQSH KILGGNASLE SLPPLPKCRQ 840 RNLRDVGAFR VKATFGEEKV RFSLQPNSGF QDLKQEIARR FKIEDFSKID LKYLDDEQEW 900 VLLTCDTDLE ECIDIHKSSQ SHTIKIALHV ASHLKFGKLV HRTAPP

Sequence ? help Back to Top

Protein Sequence Length: 946 aa Download sequence Send to blast

MDDGNFTSIS TFGACPGTAM DLDFMDELLY DGCWLETTDS FDFLQSGPSR SGPVDDSSQY  60
LPYSDGNSGN LSMNLNPHQQ VYQDETKRRV TENPSLVYPK IEELHETHIQ NHQGFDPTSS  120
SGQSGNLLIQ GNELGRRWWI APRANTGSSS SVKERLVCAI AHLKEYIKDG NTLVQIWVPV  180
KKGGKHVLTT NEQPYSLDPS CKSLESYRNV STTYHFAVDE DSKEFDGLPG RVFLGKLPEW  240
TPDVRFFRSD EYRRVNYAQQ YDVHGSLALP VFERGSGTCL GVVEIVTTSQ KIQYRPDLEN  300
VCKALEAVDL RSSENFSNSC VKAHNKLNHT AMPELAEVLR SVCKTHNLPL ALTWAPCGQQ  360
GKGGCVRSDE NYAHCFLTVD SACFVANQKF SNFLVACSEH QLFQGQGIVG KAFTLRKQCF  420
AADITAFSKS NYPLSHHARM FDLHAAIAIP LQGISTGMIE FVLEFFLPKD CQDTEEQKRT  480
VNSLSVVIRQ LCESLPLAME NELEEVLLPI GEMGVTSDSS SPSKGTSPEQ SSWISHMIET  540
QQKGKGIAVS WECQKEEPKE EFNVMTGWYD AQADSYHKQL FPGFCQFQQN SGAKTSVEDG  600
GDSSSLGGRH PVGSRKAGEK RRTKTEKTIS LQVLRQYFAG SLKDAAKSIG VCPTTLKRIC  660
RQHGITRWPS RKIKKVGHSL RKLQLVIDSV QGAEGAIQIG SFYTSFPELS SPNFSGNDPF  720
SSVKTGDRLK PSNLQPDNGF FGTGAAVSKS PSSSCSQSSG SSTCCSTGAK QNIATVNALS  780
SGEAQMVEES GGVLKRAHSH AELHALNQEE PKLLPRSQSH KILGGNASLE SLPPLPKCRQ  840
RNLRDVGAFR VKATFGEEKV RFSLQPNSGF QDLKQEIARR FKIEDFSKID LKYLDDEQEW  900
VLLTCDTDLE ECIDIHKSSQ SHTIKIALHV ASHLKFGKLV HRTAPP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006422434.1	0.0	protein NLP2
Refseq	XP_024035066.1	0.0	protein NLP2
Swissprot	Q7X9B9	0.0	NLP2_ARATH; Protein NLP2
TrEMBL	A0A173G8J6	0.0	A0A173G8J6_PONTR; Transcription factor NLP2
STRING	XP_006422434.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1998	27	77

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G35270.1	0.0	Nin-like family protein