PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1123_f_11
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Trihelix
Protein Properties Length: 581aa    MW: 66092.3 Da    PI: 7.5716
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1123_f_11genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.86.9e-1445104266
        trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                     W+++e laL+++r+++e+++ +       We+vs+k+ e g++rs+++Ckek+e+ ++ + +++ 
  Neem_1123_f_11  45 WSNDELLALLRIRSSLENWFPEL-----TWEHVSRKLDELGYKRSAEKCKEKFEEESRSFNNMNY 104
                     ********************987.....9****************************99998775 PP
2trihelix95.26.1e-30426512186
        trihelix   1 rWtkqevlaLiearremeerlr..rgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW+++evlaLi++r +  ++    +g+++ plWe++s+ m + g++rs+k+Ckekwen+nk+++k+k+++kkr s +s+tcpyf+ql 
  Neem_1123_f_11 426 RWPRDEVLALINLRCNFYNNGDdkEGAARTPLWEKISQGMLQLGYKRSAKRCKEKWENINKYFRKTKDTNKKR-SLDSRTCPYFHQLS 512
                     8**************8888887335789********************************************8.9999********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00717234198IPR001005SANT/Myb domain
PROSITE profilePS500906.3534396IPR017877Myb-like domain
PfamPF138371.4E-944106No hitNo description
Gene3DG3DSA:1.10.10.606.7E-4418486IPR009057Homeodomain-like
SMARTSM007170.26423487IPR001005SANT/Myb domain
PfamPF138377.7E-19425512No hitNo description
CDDcd122037.12E-22425492No hitNo description
PROSITE profilePS500906.737426485IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001158Molecular Functionenhancer sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MQPSAAAPKN EEKEEKINRS SSLVGMNNLE TERERSIAEP VDSAWSNDEL LALLRIRSSL  60
ENWFPELTWE HVSRKLDELG YKRSAEKCKE KFEEESRSFN NMNYNKNYRI FFSEFVDEYD  120
DEEQLYHGRQ NPQKVEQNKK MEQPRGEEEE DKTTHEQNLE GDPTNNQTVG NKPSDRPQDK  180
ENRLVEKALL KGKKRKRDEN FEMFKVFCED IVKKMIAQQE AMHSKLLEDM VKRDEEKVAR  240
EEAWKKQEMD RINKELEVRA FEQAIASDRQ ATIIKFLTKF TSPSSSNAAD QHQSVGGRSE  300
ESSVKHKVLN CSSNPPTSSS LILAEDPNPT CQQANKQNNL EALPNSASSQ TQNNPIMSTS  360
LSKNLAPQNP SSNPASKVAT SSGVAQGPKN PSSPNTQNKQ LVPTSPPRQN ASQKVTSNDK  420
EDIGKRWPRD EVLALINLRC NFYNNGDDKE GAARTPLWEK ISQGMLQLGY KRSAKRCKEK  480
WENINKYFRK TKDTNKKRSL DSRTCPYFHQ LSTLYNQGTV VASSGGTENR LALPENHSTL  540
SQNHRGSSQG GNSITDSTMH VAHQGEKNLV QQVPAAFDFE F
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00011PBMTransfer from AT5G28300Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006471910.10.0trihelix transcription factor GTL2
RefseqXP_024038652.10.0trihelix transcription factor GTL2
TrEMBLA0A067DF240.0A0A067DF24_CITSI; Uncharacterized protein
STRINGXP_006471910.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM82682838
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28300.16e-96Trihelix family protein