PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1118_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family TALE
Protein Properties Length: 675aa    MW: 74008 Da    PI: 5.7632
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1118_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.9e-094204571954
                    HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
       Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                    Fe   ++yp+ +++  LA+++gLt +qV++WF N R +
  Neem_1118_f_1 420 FEHflHPYPKDSDKIMLARQTGLTRSQVSNWFINARVR 457
                    664459******************************88 PP
2BELL1252.8e-40282353172
           BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                    erqelq+k +kLls+l+eVd+rYkqy++q+q+v+ssF+++ag+g+akpYt+lAl++iS hFr+L+dai++qi
  Neem_1118_f_1 282 ERQELQNKLTKLLSMLDEVDRRYKQYYHQMQIVVSSFDVIAGCGAAKPYTALALQTISCHFRSLRDAITGQI 353
                    79*********************************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005748.1E-62205351IPR006563POX domain
PfamPF075261.3E-50211350IPR006563POX domain
PROSITE profilePS5007112.163398461IPR001356Homeobox domain
SMARTSM003891.0E-9401465IPR001356Homeobox domain
CDDcd000864.71E-13401462No hitNo description
SuperFamilySSF466892.95E-17402468IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.0E-29404467IPR009057Homeodomain-like
PfamPF059204.6E-18418457IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 675 aa     Download sequence    Send to blast
MATYFTNSSN QREGAPMMYL RDSLPGSYPE APVLPGNVMM YMNSGSYSDT LAGSSQQQNN  60
CIDIQSVEPS DSAPQQQEIF SNLGGTRIGE HEFNAWRDNR NEMLVMHPMS SSTSMLHGGQ  120
NLQGQGLSLS LGTQIPSGIQ MPSISYRNPN SGFASFLNSN SSIVGDGGRN GSSRDEQSRN  180
AEYLLPGISG GNQDGKGDLS PYGMSSIART IPSSKYLKAA QQLLDEVVNV RKALKQADGE  240
KSQSTLEQRM KSSKDGEGGS KDTPSNAQES SSNTQSELSH VERQELQNKL TKLLSMLDEV  300
DRRYKQYYHQ MQIVVSSFDV IAGCGAAKPY TALALQTISC HFRSLRDAIT GQIRATRKSL  360
GEQDTSENGK GVGITRLRYV DQQLRQQRAL QQLGMMQQHA WRPQRGLPES SVSILRAWLF  420
EHFLHPYPKD SDKIMLARQT GLTRSQVSNW FINARVRLWK PMVEEMYKEE FADAEMDSNS  480
SSDNAAKATK GDMITSEDRE EDLQQSGSST ATERCSTGQL TDSKSDHLPD IEMAGASFQN  540
GTCGEADTNY RLLKLREEQR TGIDDCSLFP DQMVPPDGGN NRFMAAAAAA YHMSELGRFR  600
SGSGVSLTLG LQHCEGGTLP MSGATHQSFV AMRGGDIYNS AASSVGTDTA DYECINNGNR  660
QPTFSSSHLL HDFVA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4xrs_A9e-17407464158Homeobox protein Meis1
4xrs_B9e-17407464158Homeobox protein Meis1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487349.10.0BEL1-like homeodomain protein 7 isoform X2
TrEMBLA0A067E6F10.0A0A067E6F1_CITSI; Uncharacterized protein
STRINGXP_006487349.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28692563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34610.21e-132BEL1-like homeodomain 6