PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

Neem_11166_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

GeBP

Protein Properties

Length: 392aa MW: 43564.4 Da PI: 5.3748

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_11166_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	131	4.7e-41	156	253	2	98
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkk.aksgkepsfskehdqkifelskki 95 lfqrlwseeDeiv+L+G+id+ +k+g++p +d++af++++kks++++vsk qlv+KirrLKkK++++ +k k+g++++fsk+h+qk+++lskk+ Neem_11166_f_1 156 LFQRLWSEEDEIVVLKGMIDYSTKKGVDPNQDMNAFHDYIKKSLHVDVSKAQLVDKIRRLKKKYQNNLEKgLKKGEDQTFSKPHEQKAYDLSKKL 250 79******************************************************************99********************* PP DUF573 96 Wgs 98 Wgs Neem_11166_f_1 251 WGS 253 *95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	7.6E-36	157	252	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence Send to blast
MAPKKANPME EPPAASSSEE EGEETSEEVT SSEDEGEEDP QEQTEPSSPP RQQTQKQTAV 60 KKPEITPATS QSKSSSSEES GSETESDSEH DATPKPIASK PMEETPKATK SRSKPAAKRP 120 NQTEEDQKDS KRAKKKGVDA DPDEEKKPGE DTKKQLFQRL WSEEDEIVVL KGMIDYSTKK 180 GVDPNQDMNA FHDYIKKSLH VDVSKAQLVD KIRRLKKKYQ NNLEKGLKKG EDQTFSKPHE 240 QKAYDLSKKL WGSESTSGVI ESAAKSNGKV RKNQNQRGNN KLLASLKAEL TDGAKEGDNM 300 EVDNNKEGNG LDKSVSVKEK ANFLFDKSFG VAGLEDFILN NGLGMIGGVK RAELEERWKK 360 LQIAQLELFL QRNELMKEQA KLILDALKSS GN

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence Send to blast

MAPKKANPME EPPAASSSEE EGEETSEEVT SSEDEGEEDP QEQTEPSSPP RQQTQKQTAV  60
KKPEITPATS QSKSSSSEES GSETESDSEH DATPKPIASK PMEETPKATK SRSKPAAKRP  120
NQTEEDQKDS KRAKKKGVDA DPDEEKKPGE DTKKQLFQRL WSEEDEIVVL KGMIDYSTKK  180
GVDPNQDMNA FHDYIKKSLH VDVSKAQLVD KIRRLKKKYQ NNLEKGLKKG EDQTFSKPHE  240
QKAYDLSKKL WGSESTSGVI ESAAKSNGKV RKNQNQRGNN KLLASLKAEL TDGAKEGDNM  300
EVDNNKEGNG LDKSVSVKEK ANFLFDKSFG VAGLEDFILN NGLGMIGGVK RAELEERWKK  360
LQIAQLELFL QRNELMKEQA KLILDALKSS GN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006449140.1	0.0	probable transcription factor At1g11510
TrEMBL	V4UDY2	0.0	V4UDY2_9ROSI; Uncharacterized protein
STRING	XP_006449140.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25210.1	2e-42	DNA-binding storekeeper protein-related transcriptional regulator