PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_11122_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 347aa    MW: 38730.8 Da    PI: 10.2123
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_11122_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.81.7e-31281338359
                     -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                     D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp ++++tYegeHnh+
  Neem_11122_f_2 281 DDYSWRKYGQKPIKGSPHPRGYYKCSSMrGCPARKHVERCLEDPAMLVVTYEGEHNHP 338
                     99***********************9988****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105334.9E-18232277IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.802.1E-33267339IPR003657WRKY domain
PROSITE profilePS5081130.4274340IPR003657WRKY domain
SuperFamilySSF1182902.75E-27277339IPR003657WRKY domain
SMARTSM007748.9E-39279339IPR003657WRKY domain
PfamPF031063.9E-27281338IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MEEVEEANKA AVESCHRVLS LLSQPQDQVQ YRNLVGETGE AVFRFKKVVS LLNTGLGHAR  60
VRKLKKFPAS VNQSILLDNP HHRTEIPSKS LQFLQSSFHE NPIQETGSLS KSSLSLGNPS  120
LELISNGKNH LQLAQQTPSS HYHFLQQQQL QQRLQLQQQQ QMKLQAEMMF RKSNSGVNLN  180
FDSSSCTPTM SSTTRSFISS LSMDGSVANL DGSAFHLIGA PRSSDQSSQQ HKRKCSGRAE  240
DGSVKCGSSG RCHCSKKRKH RVKRSIKVPA ISNKLADIPP DDYSWRKYGQ KPIKGSPHPR  300
GYYKCSSMRG CPARKHVERC LEDPAMLVVT YEGEHNHPRL PSQSATT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-202753411075WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC4852916e-49KC485291.1 Jatropha curcas WRKY transcription factor (WRKY39) gene, complete cds, alternatively spliced.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006479579.10.0probable WRKY transcription factor 21
RefseqXP_024045169.10.0probable WRKY transcription factor 21
RefseqXP_024045170.10.0probable WRKY transcription factor 21
RefseqXP_024954695.10.0probable WRKY transcription factor 21
SwissprotO043361e-134WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLV4VV690.0V4VV69_9ROSI; Uncharacterized protein
STRINGXP_006479579.10.0(Citrus sinensis)
STRINGXP_006443899.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.11e-106WRKY DNA-binding protein 21