PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10904_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bZIP
Protein Properties Length: 236aa    MW: 26518.1 Da    PI: 6.5453
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10904_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_147.24.8e-15145205362
                     XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH.HHHHHHHHHHHHHHHHH CS
          bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL.kkeleelkkevaklkse 62 
                     + +r+rr++kNRe+A rsR+RK+a++ eLe  +  Le+eN++L k+++e++k+ +++l  +
  Neem_10904_f_1 145 AQQRQRRMIKNRESAARSRERKQAYQVELESLAVRLEEENERLlKEKAERIKERYKQLMEK 205
                     679**************************************9636789********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.2E-10143208IPR004827Basic-leucine zipper domain
PfamPF001703.2E-13145205IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.599145197IPR004827Basic-leucine zipper domain
CDDcd147073.35E-17147193No hitNo description
SuperFamilySSF579591.41E-9147197No hitNo description
Gene3DG3DSA:1.20.5.1705.6E-12148205No hitNo description
PROSITE patternPS000360150165IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 236 aa     Download sequence    Send to blast
MTVDGILRNV YNTTAASTTD ATLLDAQITL IDTNDHHQHH PTENENVALA GAIKTVDDVW  60
REIVSGEKKE MKEEAVDEMM TLEDFLAKAG ARLSGGVYAF DPSPASPFQV EGQIVGFGNG  120
AEVVGGVSGR GKRGRVLLEP LDKAAQQRQR RMIKNRESAA RSRERKQAYQ VELESLAVRL  180
EEENERLLKE KAERIKERYK QLMEKVVPVV EKRRPPRVLR RENPPFTLEE CGSNII
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter. G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. {ECO:0000269|PubMed:8146148}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473064.11e-119G-box-binding factor 4
SwissprotP427773e-54GBF4_ARATH; G-box-binding factor 4
TrEMBLA0A067H7S81e-117A0A067H7S8_CITSI; Uncharacterized protein
STRINGXP_006473064.11e-119(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38522855
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44080.16e-43bZIP family protein