PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10840_f_3
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 568aa    MW: 62935.4 Da    PI: 9.799
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10840_f_3genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH48.71.4e-15394440455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      hn  Er+RR+riN+++  L+el+P++      K++Ka++L +A+eY+ksLq
  Neem_10840_f_3 394 VHNLSERKRRERINKKMRALQELIPNC-----NKVDKASMLDEAIEYLKSLQ 440
                     6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.88E-17386444No hitNo description
Gene3DG3DSA:4.10.280.107.2E-20387448IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-20387454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.981390439IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-13394440IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.1E-17396445IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MNSLRNHNLS SMSDKEFFEL LWEDGQLLMR GFPKRTEKKY PSCIGHSSYS SSTTGDHFKN  60
GGDCAFPPKT AKFEAVDSIL ISESPHDNKK DFHLNLTHNN SLLDKKHHES LPELYQKHFN  120
EFSVKDRANS YDKFLQNSQV VPVHEYANSK PGYASNHLSS QPEQFPLQQY QSSTPIKRPR  180
VSPNLASPGS LPGSILREQD SEPNRKRETV NFSFFLRSPA MATSSRGFSR AEDLKTNAKT  240
SVPRNDKLFE SPPIAAAATA SKSIKGFQTQ LSNAEMLPPI ATAPDKALPD DQSEAVRKRS  300
PNHQVYGQTS SLPANTVEGK LNTEKTIEPA VASSSFCSRG ASNNPTYTFK SRYEETDGSA  360
CPSDDNVEEK PTNVKKAVPA RGSKCNRKRR TAEVHNLSER KRRERINKKM RALQELIPNC  420
NKVDKASMLD EAIEYLKSLQ FQVQMMSMGT GVCMPPPMML PARMQQIHAP QMTHFSPMGV  480
GMGMRMQMGF GCGSPQFLIP GAMPLPGLAE TRIQMPAGFP GQPLPISSMF RATVELMQKT  540
VPIAGVSRPA ASVKFMDSAP LTNSKDSI
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1387402KRRTAEVHNLSERKRR
2398403ERKRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006492434.11e-151transcription factor APG isoform X1
RefseqXP_006492435.11e-151transcription factor APG isoform X1
TrEMBLV4VWZ31e-149V4VWZ3_9ROSI; Uncharacterized protein
STRINGXP_006492434.11e-150(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16436813
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G09530.24e-40phytochrome interacting factor 3