PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10812_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

TCP

Protein Properties

Length: 329aa MW: 34890.2 Da PI: 6.2544

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10812_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	49.8	1.3e-15	19	111	28	89
TCP 28 caarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg..............................k 89 +aa + eLG+++d++tieWLlqqa+pai+++tgt++++a+++ ++s +ss+s+ s++ + Neem_10812_f_1 19 VAAPAVFMEIELGHKSDGETIEWLLQQAEPAIIAATGTGTIPANFStLNVSLRSSGSTLSAPpsksvphsfhgalalaghhhhhyeegfphtA 111 55555555679********************************99988888888888555555555666666666665555555555544330 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	11.075	1	53	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	2.2E-18	17	125	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 329 aa Download sequence Send to blast
MADQGRSSVQ YQSKLALHVA APAVFMEIEL GHKSDGETIE WLLQQAEPAI IAATGTGTIP 60 ANFSTLNVSL RSSGSTLSAP PSKSVPHSFH GALALAGHHH HHYEEGFPHT ALLGFHHPQQ 120 QQQQHHLMTA DQIAEALPSG ESVGGGGGGG GGDSSETYMR KRYREDLFKE DDNCNNNNNN 180 NNAQSQDESG GTGGGGEEGG RESSVNKAFK SSLQLPNKQQ QQQQQQVLSA PAMWAVAPAP 240 SSGAGSTFWM VTGASGAAAG PSEQQQQPQQ PQIWPFQHPA ATPSTATTLQ APLHFVPRFN 300 LPTGNLEFQT GRTANPLQLG SIFSSHELN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022762795.1	2e-99	transcription factor TCP8-like
TrEMBL	A0A067LE96	3e-95	A0A067LE96_JATCU; Uncharacterized protein
STRING	EOX97160	7e-96	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10218	24	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	1e-30	TCP family protein