PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10594_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family WRKY
Protein Properties Length: 321aa    MW: 36051.8 Da    PI: 6.4337
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10594_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY79.34.1e-25131192159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDg++WrKYGqK++  +++pr+Y+rCt++   gC+++k+v+r +edp ++ +tY g+H ++
  Neem_10594_f_1 131 LDDGHAWRKYGQKVILHAKYPRNYFRCTHKhdqGCQATKQVQRIQEDPPMFRTTYYGQHSCK 192
                     59***************************99999*************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.4E-26118192IPR003657WRKY domain
SuperFamilySSF1182903.79E-25125192IPR003657WRKY domain
PROSITE profilePS5081122.515126190IPR003657WRKY domain
SMARTSM007749.0E-39131193IPR003657WRKY domain
PfamPF031061.0E-24132192IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0009864Biological Processinduced systemic resistance, jasmonic acid mediated signaling pathway
GO:0010200Biological Processresponse to chitin
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:1900056Biological Processnegative regulation of leaf senescence
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MDSSSSWPEK LPSDRRRAIE ELVKGREFAL QLRNLMHKSV GNGGSQVLVN QDLVVNILNS  60
FTTSLSILNY GDPDEVSQVP TQTQLSAWDA AYRKSEDSGE SSKSSTIRDR RGCYKRRKCA  120
ETRTQTSSAL LDDGHAWRKY GQKVILHAKY PRNYFRCTHK HDQGCQATKQ VQRIQEDPPM  180
FRTTYYGQHS CKNLLKASQF FLDSATEQGP MISFGTDITD KDWNPLFTSL QSIKQESNDN  240
HHHNQGPSDM TYKNQSSSSD YLLSSDQMTA FESTGHMTVL SSDDVISGVN SSSCTANAHS  300
LDMGAGIVES VDFDDVLQFE F
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-22131192869OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00408DAPTransfer from AT3G56400Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006429596.21e-141probable WRKY transcription factor 70
RefseqXP_006481203.11e-141probable WRKY transcription factor 70
TrEMBLA0A2H5MW981e-139A0A2H5MW98_CITUN; Uncharacterized protein
STRINGXP_006481203.11e-140(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM167191012
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.17e-40WRKY DNA-binding protein 70