PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10533_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family bHLH
Protein Properties Length: 191aa    MW: 22003.7 Da    PI: 8.0228
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10533_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.43.8e-1173123254
                     HHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
             HLH   2 rrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                     +  h  +Er+RR+++   +  Lr+llP       ++K s ++   +Av+YIk+L
  Neem_10533_f_1  73 KIIHRDIERQRRQEMSALYRALRSLLPFqY---LKGKRSISDHMHEAVNYIKDL 123
                     56699***********************66...9******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474593.93E-1569139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.07E-1269128No hitNo description
PROSITE profilePS5088813.77671123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-1173141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.9E-873123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.001977129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MQLDIIMDYI PSIFHFDQSD HHDLLQFSDH NLLSKPSEDC SDLPSKSDNR QRWKLSNSFA  60
VNGDSPTDSK KRKIIHRDIE RQRRQEMSAL YRALRSLLPF QYLKGKRSIS DHMHEAVNYI  120
KDLRNKIQEL SEKRDELRRL SDTSTCGSGS ECSQTHPEGS ITVRPCLGGV EIAVSTAFKK  180
WASPFHNLET S
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17083KRKIIHRDIERQRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006477344.13e-56transcription factor bHLH36
TrEMBLA0A067F8F62e-55A0A067F8F6_CITSI; Uncharacterized protein
STRINGXP_006477344.11e-55(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM29682767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G62975.12e-34bHLH family protein