PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10472_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Trihelix
Protein Properties Length: 377aa    MW: 43540.9 Da    PI: 6.7162
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10472_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix859.4e-27252336186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                     rW++ e++aLi +r+ +e+++  + +k   W+e+s  mr+ g+ rs+k+Ckekwen+nk+++k  e+ kk+  e+s++cpyf++le
  Neem_10472_f_2 252 RWPEAEIQALIMLRTTLEHKFHVTGSKCSIWDEISVGMRDMGYDRSAKKCKEKWENMNKYFRKSMENGKKH-VEKSKSCPYFHDLE 336
                     8********************************************************************99.678889******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.0045249311IPR001005SANT/Myb domain
PfamPF138377.6E-19251336No hitNo description
CDDcd122037.53E-26251315No hitNo description
PROSITE profilePS500906.713252309IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MEVLTGDREN EFPQQLTPFP EPLDLPTGLE SANVPPQKLR PIRRSPTEDR PSFLGKQMCG  60
VTGESGVCFC NGYKGRKAAE NGVGSSSSDN DHKDLLSVFS SSSDNNHEDL LTETEGPRNQ  120
KRKRKAREKI ESYLESMVMK IMEKQEQMNR ELIEMIERRE RERIIREEAW KQQEMERTKR  180
DEEIRARETD RSIALITFIQ SVLGQEIQVP QALPVSCMEE DGGRDGRNHT KNNIMCKENN  240
RRCQEASDPN KRWPEAEIQA LIMLRTTLEH KFHVTGSKCS IWDEISVGMR DMGYDRSAKK  300
CKEKWENMNK YFRKSMENGK KHVEKSKSCP YFHDLEVLYR NGLINPGNVS NFPNFENVSE  360
SDASNTNHET ATKTENK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006467269.11e-157trihelix transcription factor GTL1
RefseqXP_006467270.11e-157trihelix transcription factor GTL1
TrEMBLA0A067GG051e-156A0A067GG05_CITSI; Uncharacterized protein
STRINGXP_006467269.11e-156(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94112736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47660.11e-44Trihelix family protein