PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10310_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

TCP

Protein Properties

Length: 263aa MW: 27114.4 Da PI: 10.5242

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10310_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	123.5	2.3e-38	32	132	3	102
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg..kaaksaa 95 +kk +++++h+kv+gR+RR+R+++ caar+F+L++eLG+++d++tieWLl+qa+p+i+++tgt++++as++ ++s s+ ++ +s + +a +s+a Neem_10310_f_2 32 VKKPPSKDRHSKVDGRGRRIRMPIICAARVFQLTRELGHKSDGQTIEWLLRQAEPSIIAATGTGTTPASFS-TVSVSVRGGGNSTSlsSAVSSSA 125 79******************************************************************887.33333333322222334444443 PP TCP 96 kskksqk 102 s + ++ Neem_10310_f_2 126 LSASLDH 132 4333333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51369	28.209	37	91	IPR017887	Transcription factor TCP subgroup
Pfam	PF03634	8.7E-34	37	129	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MSNSDGATNG VSKGAIVDPQ RQQPPGNGAL VVKKPPSKDR HSKVDGRGRR IRMPIICAAR 60 VFQLTRELGH KSDGQTIEWL LRQAEPSIIA ATGTGTTPAS FSTVSVSVRG GGNSTSLSSA 120 VSSSALSASL DHKPSLGPTP FILGKRVRAD DDGTKGDDTM SAVGPTAVGS IVGTGTPGSG 180 FWAVPARPDF GQVWSFAAAA AAPPEMVVQA AQQQQPHQLF MQQQAMGEAS AARVGNYLPG 240 HLNLLASLSG GPGSSGRRDE DPR

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00524	DAP	Transfer from AT5G23280	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006437619.1	1e-143	transcription factor TCP7
Swissprot	Q9FMX2	7e-99	TCP7_ARATH; Transcription factor TCP7
TrEMBL	A0A067ENE6	1e-141	A0A067ENE6_CITSI; Uncharacterized protein
TrEMBL	A0A2H5P3J5	1e-141	A0A2H5P3J5_CITUN; Uncharacterized protein
TrEMBL	V4VEH8	1e-141	V4VEH8_9ROSI; Uncharacterized protein
STRING	XP_006437619.1	1e-142	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1782	26	85

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23280.1	8e-69	TCP family protein