PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1025_f_2
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Trihelix
Protein Properties Length: 491aa    MW: 53733 Da    PI: 7.7147
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1025_f_2genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.31.5e-1686191187
       trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....................rergferspkqCkekwenlnkrykkikegekkrtsess 76 
                    +W++  + +L+ea++e+ ++l+rg+l++ +Weev+++                     ++++  +s +qCk+k++nl+kryk + +++++    +s
  Neem_1025_f_2  86 EWSDTAIACLLEAYTEKFNQLNRGNLRGRDWEEVAEAGsercgggyngdnsnssndkqQQQKAWKSVEQCKNKIDNLKKRYKVELQRMNSS-GSAS 180
                    5**********************************9999999**************99999999******************999888885.5677 PP

       trihelix  77 stcpyfdqlea 87 
                    s++ +f+q+ea
  Neem_1025_f_2 181 SNWHWFKQIEA 191
                    7*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.2E-1684192No hitNo description
Gene3DG3DSA:3.40.1160.101.3E-65245484IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.2E-51254484IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B31.555254485IPR015963Uridylate kinase, bacteria
CDDcd042541.00E-114257485No hitNo description
PfamPF006962.0E-16258464IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MASQDYPLIA DPHAPTHLPQ TADSTTADYY AHSAFTTNEN SDADKSVSGS GSGSKRNPYY  60
YKKQKTGNTS ETASDYRVDY RKDREEWSDT AIACLLEAYT EKFNQLNRGN LRGRDWEEVA  120
EAGSERCGGG YNGDNSNSSN DKQQQQKAWK SVEQCKNKID NLKKRYKVEL QRMNSSGSAS  180
SNWHWFKQIE AIMGSINNNS NLVNKSIVAE TEERTGGAAA SPIAVSPLTR QAKRYTPSNA  240
LIQHNMKSKP QQNLKWRRVV FKISGSALVG NCQNIDPKVV MQIAREVATA CRLGVEVAIV  300
IGGRNFFCGD SWVSDTGFDR PTAYQIGMMA TVMNSILLQS ALEKLEVPTR VQSAFAMPEV  360
AEPYSRQRAI RHLEKGRVVI FGGIGAGTGN PLFTTDTAAA LRASENVVLK GTNVNGIYDC  420
HSGNGNVALE HISFREAVSS NFTTMDTMAL TYCEENGIPV VVFNLLEPGN ISRALCGDQV  480
GTLIDQTGGI S
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A3e-592484841239Uridylate kinase
3ek5_B3e-592484841239Uridylate kinase
3ek5_C3e-592484841239Uridylate kinase
3ek5_D3e-592484841239Uridylate kinase
3ek5_E3e-592484841239Uridylate kinase
3ek5_F3e-592484841239Uridylate kinase
3ek6_A3e-592484841239Uridylate kinase
3ek6_B3e-592484841239Uridylate kinase
3ek6_C3e-592484841239Uridylate kinase
3ek6_D3e-592484841239Uridylate kinase
3ek6_E3e-592484841239Uridylate kinase
3ek6_F3e-592484841239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006436611.10.0uncharacterized protein LOC18045004
TrEMBLV4TJA00.0V4TJA0_9ROSI; Uncharacterized protein
STRINGXP_006436611.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-165Trihelix family protein