PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_1023_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family GRAS
Protein Properties Length: 585aa    MW: 64347.8 Da    PI: 4.7685
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_1023_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4585.8e-1402165781374
           GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                    lv++L++cAea+++++l+la+al++++  la+++  +m+++a+yf+eALa++++r       ++p    +   +s +   +  f+e++P+lkf+h+
  Neem_1023_f_1 216 LVHTLMACAEAIEQDNLKLADALVKHIGLLAASQSGSMRKVATYFAEALARKIYR-------IFPQDCLD---VSYNDILQMHFYETCPYLKFAHF 301
                    689****************************************************.......23333332...3333334446************* PP

           GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                    taNqaIlea+++++rvH+iDf+++qG+QWpaL+qaLa Rp+gpp +R+Tg+g+p+++++++l+++g++La++A+++gv+fef+ +v+++l+dle+e
  Neem_1023_f_1 302 TANQAILEAFSTANRVHVIDFSLKQGMQWPALMQALALRPGGPPAFRLTGIGPPQPDNTDALRQVGWKLAQLADTIGVDFEFRGFVCNSLADLEPE 397
                    ************************************************************************************************ PP

           GRAS 193 eLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                    +L+++p   E++aVn+v++lhrll++++ +e+    v++++k ++Pk++++veqea+hn++ Fl+rf+eal+yys+lfdsle +  +  +++++++
  Neem_1023_f_1 398 MLDIRPaeVETVAVNSVFELHRLLARPGGIEK----VVSAIKAMKPKIITIVEQEANHNNPVFLDRFTEALHYYSSLFDSLEGTGLTPPSQDQVMS 489
                    ******8899*********************9....*********************************************766555667888999 PP

           GRAS 287 rellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374
                    +++lgr+i+nvvaceg er+erhetl++Wr r+++aGF pv+l+++a kqa++ll+ ++ +dgyrvee++g+l+lgW++rpL+++SaW+
  Neem_1023_f_1 490 EVYLGRQICNVVACEGPERTERHETLAQWRTRMTSAGFDPVHLGSNAFKQASMLLALFAgGDGYRVEENNGCLMLGWHTRPLIATSAWQ 578
                    999*************************************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF120414.2E-3641107IPR021914Transcriptional factor DELLA, N-terminal
SMARTSM011297.8E-3941114No hitNo description
PROSITE profilePS5098568.281190557IPR005202Transcription factor GRAS
PfamPF035142.0E-137216578IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MKRDRQESCG GNGNGKGDSS SMGNPNKAKL WGEEQEAGGM DELLEVLGYK VRSSEMADVA  60
QKLEQLEMVM GTAQEDGISH LACDTVHYNP SDLCGWVQNM LSELNNTGFD APTRPIQDPA  120
ESSSVNSIIC PNSLERQRQQ ISNQARVFND DSEYDLRAIP GVAAYPQPDS DSENSNKRMR  180
IDSPAPPPIG AVPNTMPSEL TRPVMVVDSQ EAGVQLVHTL MACAEAIEQD NLKLADALVK  240
HIGLLAASQS GSMRKVATYF AEALARKIYR IFPQDCLDVS YNDILQMHFY ETCPYLKFAH  300
FTANQAILEA FSTANRVHVI DFSLKQGMQW PALMQALALR PGGPPAFRLT GIGPPQPDNT  360
DALRQVGWKL AQLADTIGVD FEFRGFVCNS LADLEPEMLD IRPAEVETVA VNSVFELHRL  420
LARPGGIEKV VSAIKAMKPK IITIVEQEAN HNNPVFLDRF TEALHYYSSL FDSLEGTGLT  480
PPSQDQVMSE VYLGRQICNV VACEGPERTE RHETLAQWRT RMTSAGFDPV HLGSNAFKQA  540
SMLLALFAGG DGYRVEENNG CLMLGWHTRP LIATSAWQLA ATESK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-7022357725377Protein SCARECROW
5b3h_D2e-7022357725377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that represses transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway (By similarity). {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006482132.10.0DELLA protein GAI
SwissprotQ84TQ70.0GAI_GOSHI; DELLA protein GAI
TrEMBLA0A067EIU70.0A0A067EIU7_CITSI; Uncharacterized protein
TrEMBLA0A2H5NUG00.0A0A2H5NUG0_CITUN; Uncharacterized protein
STRINGXP_006482132.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM83728121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01570.10.0GRAS family protein