PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10194_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

NAC

Protein Properties

Length: 264aa MW: 30127.1 Da PI: 4.6403

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10194_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	96.9	3.1e-30	17	146	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 ++G+rF+P+de+lv +yL+ k+++++ +++ + i++vdiy++eP++L + + +++++yfF++ ++++++ ++ nr + g+W++tg+ v++ Neem_10194_f_1 17 TKGIRFKPKDEQLV-DYLEWKLSDRTpNRTLQGIRQVDIYQHEPSQLSdFASDLGDRNMYFFTTLETENRNWTNVNRLAPGGFWEKTGNPCFVKD 110 68**********.9**99995555566**********8556677999****************99************ PP NAM 95 kkgelvglkktLvfykgrapkge..ktdWvmheyrl 128 ++g+ + k+++++yk+++++ge kt+W+m+ey l Neem_10194_f_1 111 ENGKIIAAKTSFIYYKNDQNSGEpvKTRWLMEEYML 146 ***********9877776555*******87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	5.1E-30	12	166	IPR003441	NAC domain
PROSITE profile	PS51005	28.779	16	169	IPR003441	NAC domain
Pfam	PF02365	7.2E-14	18	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 264 aa Download sequence Send to blast
MNPNPESLPA NDSLKVTKGI RFKPKDEQLV DYLEWKLSDR TPNRTLQGIR QVDIYQHEPS 60 QLSDFASDLG DRNMYFFTTL ETENRNWTNV NRLAPGGFWE KTGNPCFVKD ENGKIIAAKT 120 SFIYYKNDQN SGEPVKTRWL MEEYMLVEKQ SAEDFRMLAP LTLCVVSILD NKKRRHCDTE 180 NECHENNNNQ SSGPETVEGS SQRSHCPYSG LPEICQNVVS TSSNQNQDHK SGSNPPANTD 240 PSMNLDDEDP LRSLSDLFSN DHEE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	9e-14	14	166	15	162	NO APICAL MERISTEM PROTEIN
1ut4_B	9e-14	14	166	15	162	NO APICAL MERISTEM PROTEIN
1ut7_A	9e-14	14	166	15	162	NO APICAL MERISTEM PROTEIN
1ut7_B	9e-14	14	166	15	162	NO APICAL MERISTEM PROTEIN
4dul_A	9e-14	14	166	15	162	NAC domain-containing protein 19
4dul_B	9e-14	14	166	15	162	NAC domain-containing protein 19

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10480.2	9e-19	NAC domain containing protein 50