PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

Neem_10124_f_2

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Dof

Protein Properties

Length: 341aa MW: 37597.2 Da PI: 10.0084

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10124_f_2	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	126	1.2e-39	38	99	2	63
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 ke+al+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+sss Neem_10124_f_2 38 KEQALNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSSS 99 7899******************************************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	6.0E-29	24	90	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.9E-33	40	96	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.134	42	96	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	44	80	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MDTAQWPQEI VVKPIEEIVT NTCPKPPAGI ERKARPQKEQ ALNCPRCNST NTKFCYYNNY 60 SLTQPRYFCK TCRRYWTEGG SLRNIPVGGG SRKNKRSSSS SSPASSKKLP DLVTPPSNLS 120 QPSAQQNPKI HEGQDLNLAF PGTQGFRSIS ELVQGPTMEN NNKSQIPNSS STTNTTSSQL 180 SALELLTGIS SRGLNSFMPM PVPDPNSVYT PGFPMQDFKP TINFSLDGLG SGYGSLQSVQ 240 ENSTGRLLFP FEDLKQVSSN SDVEQNRDQH GDSSGYWTGM LGGGSWFEKF RDSLMKQTAR 300 ELKKKKKMKK SSQVRKSDNS HMTLLSIGTT KPAASTQKQT C

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	301	308	LKKKKKMK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022736728.1	1e-158	dof zinc finger protein DOF4.6-like
Swissprot	Q8LAP8	2e-74	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	A0A1U8NE12	1e-155	A0A1U8NE12_GOSHI; dof zinc finger protein DOF4.6
STRING	EOY23946	1e-154	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3433	27	61

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	8e-63	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]