PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Neem_10113_f_1
Organism
Azadirachta indica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
Family Trihelix
Protein Properties Length: 264aa    MW: 31790.5 Da    PI: 5.481
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Neem_10113_f_1genomeNGDView Nucleic Acid
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix75.21.1e-231091186
        trihelix  1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86
                    +W  +e+++Li +r e+e+++   k++k+ We vs k+re+g++r+p qCk+kw+nl +ryk  ++++ +    s ++cp+fd+l+
  Neem_10113_f_1 10 QWGSDETRELIVIRGELERDFFGIKRNKTVWEVVSVKLREKGYSRTPDQCKCKWKNLVNRYKGKETSDPE----SGRQCPFFDELH 91
                    7**************************************************************9999997....4678******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.654367IPR017877Myb-like domain
PfamPF138371.3E-22992No hitNo description
CDDcd122033.15E-21974No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MLTSSTQQSQ WGSDETRELI VIRGELERDF FGIKRNKTVW EVVSVKLREK GYSRTPDQCK  60
CKWKNLVNRY KGKETSDPES GRQCPFFDEL HAVFTERAKN MQKLLTESEA GSSQAKKRIK  120
RMNVDELSDE EEEEDDDDDK SEEEEKPVRG NSRKRKIERN VSDKSSRASS VTATIEEMLK  180
GFFEQQHRME MEWREMMERR ARERQLFEEE WRQRMERLEK ERLLAEQAWR ERDEERRIRE  240
ESRAERRDDL LTTLLTKLIN QNNL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ebi_A9e-131181777DNA binding protein GT-1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006432827.11e-132trihelix transcription factor GT-3b
RefseqXP_006471559.11e-132trihelix transcription factor GT-3b
TrEMBLA0A2H5Q8731e-131A0A2H5Q873_CITUN; Uncharacterized protein
STRINGXP_006471559.11e-131(Citrus sinensis)
STRINGXP_006432827.11e-131(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17512910
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38250.18e-32Trihelix family protein