PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Neem_10073_f_1

Organism

Azadirachta indica

Taxonomic ID

124943

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta

Family

Trihelix

Protein Properties

Length: 285aa MW: 32335.1 Da PI: 8.5558

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Neem_10073_f_1	genome	NGD	View Nucleic Acid

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	57.5	3.6e-18	21	104	2	76
trihelix 2 WtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsess 76 Wt +e+++Liea++ ++er +++ ++ +W++v ++++++g+ rs++qC++kw+nl ++ykk+++ e+k + e+ Neem_10073_f_1 21 WTVSETMVLIEAKQMDDERRMKRSsgdtsegrgkPAELRWKWVEDYCWRKGCLRSQNQCNDKWDNLMRDYKKVRDYERKVA-EKP 104 ***********96665555322234444444499****************************************973.333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.98	13	87	IPR017877	Myb-like domain
Pfam	PF13837	9.8E-14	20	101	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 285 aa Download sequence Send to blast
MADQGGNSNT TVMREYRKGN WTVSETMVLI EAKQMDDERR MKRSSGDTSE GRGKPAELRW 60 KWVEDYCWRK GCLRSQNQCN DKWDNLMRDY KKVRDYERKV AEKPGEVSYW KIEKNERKDK 120 NLPSNMLLQI YEALVEVVEK KGAVSIDWNL VPYFYVVEIC DSSDSDTSEY SDSSPAKRRR 180 KGGGEYGNQG TSAGTASGSS SHELGTAISK SASIIAEALQ ASEEKEEKRH RDLISLHERR 240 LKIEESKTEI NRQGINGLVD AINKLANSIL ALASNNKNQH SAPKS

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012077873.1	1e-120	methyl-CpG-binding protein 2
TrEMBL	A0A1R3H6A7	1e-132	A0A1R3H6A7_9ROSI; Putative transcription factor
STRING	XP_006468473.1	1e-117	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3493	26	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G35640.1	8e-62	Trihelix family protein