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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Neem_10055_f_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Meliaceae; Azadirachta
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Family | NAC | ||||||||
Protein Properties | Length: 382aa MW: 43075 Da PI: 6.6047 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 182 | 1.4e-56 | 16 | 143 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdee++++yL++kv ++++++ ++ evd++k+ePwdLpkk+k +ekewyfF++rd+ky+tg r+nrat++gyWkatgkdke+++ Neem_10055_f_1 16 LPPGFRFHPTDEEIITHYLTEKVMNTSFSA-CAVGEVDLNKSEPWDLPKKAKMGEKEWYFFCQRDRKYPTGMRTNRATDAGYWKATGKDKEIYKG 109 79*************************999.67***************99999*****************************************9 PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 kg lvg+kktLvfy+grapkgekt+Wvmheyrle Neem_10055_f_1 110 KGCLVGMKKTLVFYRGRAPKGEKTNWVMHEYRLE 143 ********************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.14E-63 | 12 | 167 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.287 | 16 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.1E-30 | 17 | 142 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005737 | Cellular Component | cytoplasm | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 382 aa Download sequence Send to blast |
MEEATVVNKG EDLIDLPPGF RFHPTDEEII THYLTEKVMN TSFSACAVGE VDLNKSEPWD 60 LPKKAKMGEK EWYFFCQRDR KYPTGMRTNR ATDAGYWKAT GKDKEIYKGK GCLVGMKKTL 120 VFYRGRAPKG EKTNWVMHEY RLEGKFSYYN LPKAAKDEWV VCRVFHKSTG IKKSPIPGLP 180 RINSIEDDFF DGYGSLPPLM DPPSSSKPGS SFTDGDHNEF KSINTAPISR SSDGNYISYI 240 PTTITNNQNF LHPPQTSNFH PQIQLQNQHF SYQTTPNPIY LHQGRNTTGA IGFGGNDQAI 300 LRALAGNINE TSKPENQCKV EQFSSNNQSM ISRSQDTGLS TDMNTTEISS VLSKQDIVSG 360 NKSYEDLDGP FNAELDSFWD NY |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-53 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-53 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-53 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-53 | 14 | 173 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-53 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 1e-53 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 1e-53 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 1e-53 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 1e-53 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 1e-53 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 1e-53 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 1e-53 | 14 | 173 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 1e-53 | 14 | 173 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 1e-53 | 14 | 173 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00518 | DAP | Transfer from AT5G18270 | Download |
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Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216771 | 3e-78 | AC216771.1 Populus trichocarpa clone POP051-N07, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007030224.1 | 0.0 | PREDICTED: NAC domain-containing protein 92 | ||||
Swissprot | Q9FK44 | 1e-118 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | A0A061F119 | 0.0 | A0A061F119_THECC; NAC domain protein, IPR003441, putative | ||||
STRING | EOY10726 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2269 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.1 | 1e-113 | Arabidopsis NAC domain containing protein 87 |
Publications ? help Back to Top | |||
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