PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | NP_001266054.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Cicereae; Cicer
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Family | NAC | ||||||||
Protein Properties | Length: 191aa MW: 21971.6 Da PI: 4.4593 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 95.6 | 7.8e-30 | 9 | 124 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGf F+Ptdeelv ++L k+++ + + ++i+++++ +++Pw+L k+ ++ +e y F++ ++ +r+ ++gyWk+ g +k+++s+ NP_001266054.1 9 LPPGFYFSPTDEELVLHFLYSKASNLPYHP-NIIPHLHLSHIDPWELYGKALSSGNEHYLFTEVKE--------SRSNENGYWKEIGATKAIVSA 94 79*************************988.89**************97777788999***98755........566679*************** PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ g+kk Lvf ++g++t+W+m+ey++ NP_001266054.1 95 ANNILGMKKYLVFT---LREGTQTNWIMEEYHI 124 *************8...68899*********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.48E-39 | 5 | 148 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 36.737 | 9 | 148 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.8E-20 | 10 | 124 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 191 aa Download sequence Send to blast |
MLGSENMKLP PGFYFSPTDE ELVLHFLYSK ASNLPYHPNI IPHLHLSHID PWELYGKALS 60 SGNEHYLFTE VKESRSNENG YWKEIGATKA IVSAANNILG MKKYLVFTLR EGTQTNWIME 120 EYHISSSTSP INLEESWSKW VLCKVYEKKM SQMSQQVCYS DEDVDSGTEV SWLDEVFMSL 180 DDDLDETSQP N |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-26 | 6 | 151 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-26 | 6 | 151 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-26 | 6 | 151 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-26 | 6 | 151 | 14 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-26 | 6 | 151 | 17 | 171 | NAC domain-containing protein 19 |
3swm_B | 2e-26 | 6 | 151 | 17 | 171 | NAC domain-containing protein 19 |
3swm_C | 2e-26 | 6 | 151 | 17 | 171 | NAC domain-containing protein 19 |
3swm_D | 2e-26 | 6 | 151 | 17 | 171 | NAC domain-containing protein 19 |
3swp_A | 2e-26 | 6 | 151 | 17 | 171 | NAC domain-containing protein 19 |
3swp_B | 2e-26 | 6 | 151 | 17 | 171 | NAC domain-containing protein 19 |
3swp_C | 2e-26 | 6 | 151 | 17 | 171 | NAC domain-containing protein 19 |
3swp_D | 2e-26 | 6 | 151 | 17 | 171 | NAC domain-containing protein 19 |
4dul_A | 2e-26 | 6 | 151 | 14 | 168 | NAC domain-containing protein 19 |
4dul_B | 2e-26 | 6 | 151 | 14 | 168 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | NP_001266054.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU339184 | 0.0 | EU339184.1 Cicer arietinum NAC transcription factor protein 2 (NAC2) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001266054.1 | 1e-141 | NAC transcription factor 25-like | ||||
Swissprot | Q8GWK6 | 3e-50 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | C0IN05 | 1e-139 | C0IN05_CICAR; NAC transcription factor 25-like | ||||
STRING | XP_004503931.1 | 1e-140 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1736 | 33 | 95 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 1e-52 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Entrez Gene | 101488537 |
Publications ? help Back to Top | |||
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