PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_026089-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family TCP
Protein Properties Length: 453aa    MW: 49070.7 Da    PI: 7.2136
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_026089-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.31.6e-39742312136
            TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................ssssasec.. 73 
                     g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWL+++a  ai el+++                       ++       
  NNU_026089-RA  74 SGGKDRHSKVLTAKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLIKAAADAIAELPSLnstfpdtpkqpsdekrpsasepRFD----Pae 165
                    689*************************************************************9999999888777765544443333....133 PP

            TCP  74 ..eaesssssasnsssgkaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136
                       +   s ++++++++ + +++a+s+ s++s+ s+l+l++ esr kar+rarert+++  +++++
  NNU_026089-RA 166 ieLETGPSYQQQQQQQHISLSKSACSSTSETSKGSVLSLSRcESRVKARERARERTAKEREKEKEK 231
                    3333344444444555577888889999999***********************999988777554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036344.1E-4275226IPR005333Transcription factor, TCP
PROSITE profilePS5136931.57776134IPR017887Transcription factor TCP subgroup
PROSITE profilePS513709.986207225IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
GO:1903508Biological Processpositive regulation of nucleic acid-templated transcription
GO:2000306Biological Processpositive regulation of photomorphogenesis
Sequence ? help Back to Top
Protein Sequence    Length: 453 aa     Download sequence    Send to blast
MEVDDIQPCK LSRIGNGRND TSKIGQKAGE QYQDEDDDDG EGRGGGGCSG GGGNDSSRLR  60
QWPASRIFRV SRASGGKDRH SKVLTAKGLR DRRVRLSVST AIQFYDLQDR LGYDQPSKAV  120
EWLIKAAADA IAELPSLNST FPDTPKQPSD EKRPSASEPR FDPAEIELET GPSYQQQQQQ  180
QHISLSKSAC SSTSETSKGS VLSLSRCESR VKARERARER TAKEREKEKE KEENHAAHQQ  240
EVNHNSQSSS FTELLTAAAA GAAASDNGNS TTSAQQNPSL SNFILKPRQM PSTPMDYFGA  300
GLFGPASSRT HHSGFSGQTH FGNPQQHSMT VQSPFSVTGD HQPELPHFSF LPDHLFPVAT  360
AAGNDYNLNF TISSGLAGFN RGTLQSNSPS PLPHLQRFSS PVDGSNVPFF IGTATSAAAP  420
VENHQFPAGF DGRLQLYYGD GCRQSDLKGK GKN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A1e-2381135155Putative transcription factor PCF6
5zkt_B1e-2381135155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00006PBMTransfer from 493022Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010247408.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_010247409.10.0PREDICTED: transcription factor TCP2-like
RefseqXP_010247411.10.0PREDICTED: transcription factor TCP2-like
TrEMBLA0A1U7ZI860.0A0A1U7ZI86_NELNU; transcription factor TCP2-like
STRINGXP_010247408.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30210.28e-41TCP family protein