PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_025896-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 422aa    MW: 47090.4 Da    PI: 8.0486
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_025896-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.11.7e-06204225223
                    EETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                     C +Cgk F+r  nL+ H+r H
  NNU_025896-RA 204 FCLICGKGFKRDANLRMHMRGH 225
                    5*******************98 PP
2zf-C2H213.40.00024290313123
                    EEETTTT.EEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                    y C++C+ k Fs  s+Lk+H + +
  NNU_025896-RA 290 YICSICNrKKFSVASDLKTHEKHC 313
                    89******************9876 PP
3zf-C2H212.50.00044321340523
                    TTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   5 dCgksFsrksnLkrHirt.H 23 
                     Cg+sF+rk+ L +H  + H
  NNU_025896-RA 321 SCGTSFTRKDKLFSHVALfH 340
                    5**************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576675.54E-5200226No hitNo description
SMARTSM003550.012203225IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.9E-5203227IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.72203230IPR007087Zinc finger, C2H2
PROSITE patternPS000280205225IPR007087Zinc finger, C2H2
SMARTSM0035552252285IPR015880Zinc finger, C2H2-like
SMARTSM003558.6290312IPR015880Zinc finger, C2H2-like
SMARTSM0035552318340IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MSRPCHEDAG IDNNGLQSVE LAQFPPYQEC NPRFFLNNLA FLRQKVHDLQ GVVRSMCIQG  60
GSDVAAATRR QLVVAEIGSI IAQMISMARR LLHTDQQIED QNARPEVNTV IVAHLSNLLG  120
DTMGLGAQDL RQIKGKGSAD GTNIDPGHCD RLVEEEKLDN SAQEVESGSS TDADGEGEEE  180
KVPSPGYEVL ELHKEEILAL NTHFCLICGK GFKRDANLRM HMRGHGDKFK TPEALANPNK  240
RAKLELVQPR RYSCPFEGCK RNQKHEKFRP LKTILCVKNH YRRSHCDKSY ICSICNRKKF  300
SVASDLKTHE KHCGKDDWKC SCGTSFTRKD KLFSHVALFH DHTPLPSMDK LRGCRISDKG  360
PKVKTKETHV GVSSTTPSRS SGFNSIVISR EDFVPDQPVP PMTQSLLLRG FTEPDGTNST  420
SE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246943.10.0PREDICTED: zinc finger protein STOP1 homolog
TrEMBLA0A1U7Z7M80.0A0A1U7Z7M8_NELNU; zinc finger protein STOP1 homolog
STRINGXP_010246943.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.26e-98C2H2 family protein