PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_025402-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family bZIP
Protein Properties Length: 445aa    MW: 47880 Da    PI: 6.5177
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_025402-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.68.8e-16237293359
                    XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
         bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                    + kr rr+ +NRe+ArrsR+RK+a + eLe+ v++L  eN++L k+l  +++++ + 
  NNU_025402-RA 237 DAKRVRRMLSNRESARRSRRRKQAHLNELENQVAQLRVENSSLLKRLADISQKYNEA 293
                    689*******************************************99999988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1702.1E-12234291No hitNo description
SMARTSM003384.3E-19235299IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.875237292IPR004827Basic-leucine zipper domain
PfamPF001703.3E-13238291IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.95E-11239290No hitNo description
CDDcd147023.99E-6240291No hitNo description
PROSITE patternPS000360242257IPR004827Basic-leucine zipper domain
PfamPF124981.6E-39306435IPR020983Basic leucine-zipper, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 445 aa     Download sequence    Send to blast
MDRVFSVEDI PDPFWPPPPP PVAPAPAPPS QSSTVQQLED LKMNRSSSEW AFQRFLQEAS  60
SVAETSPSSV SAASSVTPPF ASHEASQRPA NGRDDEVVEI KKPPPPPPPP HSDPSPNVPI  120
DSEEYQAFLK SRLNLACAAV ALSRAAKPHD SALLAENASQ TSDASQLGSQ TSAKGPGYGF  180
SRAQDKACGV GVSALPAIQK KLGAQTKPTT SGSSREQSDD DEVDGETEIT ENMDPADAKR  240
VRRMLSNRES ARRSRRRKQA HLNELENQVA QLRVENSSLL KRLADISQKY NEAAVDNRIL  300
KADVETLRAK VKMAEETVKR VTGFNPFLQA MSADINNNEA MGFSGSSSDT SADAAVPVHD  360
DPKRHFCQPA AGAPPPSHHT TTHDHRVNNG GLPDVPPVAA VEDVQHVTGD TKMGRTSSLQ  420
RVASLEHLQK RIRGSSSSCG PVQWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1251258RRSRRRKQ
2253258SRRRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box-like motif (5'-ACGTGGC-3') of the chalcone synthase (CHS) gene promoter. G-box and G-box-like motifs are defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010246327.10.0PREDICTED: light-inducible protein CPRF2-like
SwissprotQ990901e-127CPRF2_PETCR; Light-inducible protein CPRF2
TrEMBLA0A1U7ZFN20.0A0A1U7ZFN2_NELNU; light-inducible protein CPRF2-like
STRINGXP_010246327.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28770.26e-47bZIP family protein
Publications ? help Back to Top
  1. Weisshaar B,Armstrong GA,Block A,da Costa e Silva O,Hahlbrock K
    Light-inducible and constitutively expressed DNA-binding proteins recognizing a plant promoter element with functional relevance in light responsiveness.
    EMBO J., 1991. 10(7): p. 1777-86
    [PMID:2050115]