PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB

Protein Properties

Length: 187aa MW: 21487.6 Da PI: 9.5497

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_025333-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	33.8	7.7e-11	14	69	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48 +g+WT+eEd +lv +++++G+g ++ + m + R+ k+c++rw +yl NNU_025333-RA 14 KGPWTPEEDIILVSYIQEHGPGVFDYYESLMItgfcesqgLLRCSKSCRLRWTNYL 69 79******************66665566666678899999**********97 PP
2	Myb_DNA-binding	47	5.9e-15	75	120	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg++T+ E+ ++++ ++lG++ W++Ia++++ Rt++++k++w+++l NNU_025333-RA 75 RGNFTPHEEGMIIHLQALLGNK-WAAIASYLP-QRTDNDIKNYWNTHL 120 89******************.*****.**********996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.0E-17	5	72	IPR009057	Homeodomain-like
PROSITE profile	PS50090	8.595	9	69	IPR017877	Myb-like domain
SuperFamily	SSF46689	4.39E-25	11	116	IPR009057	Homeodomain-like
SMART	SM00717	2.3E-6	13	71	IPR001005	SANT/Myb domain
Pfam	PF00249	2.9E-9	14	69	IPR001005	SANT/Myb domain
CDD	cd00167	2.40E-6	16	69	No hit	No description
PROSITE profile	PS51294	23.259	70	124	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.0E-25	73	125	IPR009057	Homeodomain-like
SMART	SM00717	3.5E-13	74	122	IPR001005	SANT/Myb domain
Pfam	PF00249	2.3E-13	75	120	IPR001005	SANT/Myb domain
CDD	cd00167	1.39E-9	77	120	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 187 aa Download sequence Send to blast
MGRPPCCDKV GIKKGPWTPE EDIILVSYIQ EHGPGVFDYY ESLMITGFCE SQGLLRCSKS 60 CRLRWTNYLR PGIKRGNFTP HEEGMIIHLQ ALLGNKWAAI ASYLPQRTDN DIKNYWNTHL 120 KKKIKKFQTA LDPQLVSNST NRHLVSKSYS DKRNLDINNH VSLLRLNQSS TYASSTENIS 180 RLLEGWM

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1h8a_C	1e-22	12	124	25	128	MYB TRANSFORMING PROTEIN
1mse_C	1e-22	14	124	4	105	C-Myb DNA-Binding Domain
1msf_C	1e-22	14	124	4	105	C-Myb DNA-Binding Domain
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor involved in the regulation of gene (e.g. drought-regulated and flavonoid biosynthetic genes) expression and stomatal movements leading to negative regulation of responses to drought and responses to other physiological stimuli (e.g. light). {ECO:0000269\|PubMed:22018045}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by abscisic acid (ABA) and osmotic stress (salt stress). {ECO:0000269\|PubMed:22018045}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246153.1	1e-121	PREDICTED: myb-related protein 306
Swissprot	B3VTV7	3e-93	MYB60_VITVI; Transcription factor MYB60
TrEMBL	A0A1U7YZP8	1e-119	A0A1U7YZP8_NELNU; myb-related protein 306
STRING	XP_010246153.1	1e-120	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08810.1	1e-86	myb domain protein 60

Publications ? help Back to Top
Jaillon O, et al. The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature, 2007. 449(7161): p. 463-7 [PMID:17721507]