PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

NNU_025204-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C3H

Protein Properties

Length: 782aa MW: 87486.5 Da PI: 5.0283

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_025204-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.6	3.3e-06	119	140	5	27
--SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHgp 27 +C ff++ G C GdrC+F Hgp NNU_025204-RA 119 PCIFFQK-GLCLKGDRCPFTHGP 140 8****.***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00356	0.0095	20	48	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.098	20	49	IPR000571	Zinc finger, CCCH-type
Pfam	PF15663	6.3E-12	21	75	No hit	No description
PROSITE profile	PS50103	11.131	51	77	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	0.24	53	76	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.774	114	141	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.8E-4	115	140	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	1.57E-5	116	139	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	5.7E-4	118	140	IPR000571	Zinc finger, CCCH-type
Pfam	PF14608	0.013	119	139	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 782 aa Download sequence Send to blast
MEVAARDSTQ PSATAEEEAL KKNTDCVYFL ASPLTCKKGS ECEYRHSEPA RINPRDCWFW 60 MNGNCLNPKC SFRHPPLDGL LGTSGASYVG SYMPAHTGAS TKILPLHAPA YSSAKQSIPC 120 IFFQKGLCLK GDRCPFTHGP QPTSNLPSQP PSPPPKVVLT TEPQDSNKAS FWGLEKFTKQ 180 QQIPRQNFVS QVEVPSSAKS VTKPEIALSK NGVPVKKSVP PITVSDDECL RYKPANGSGI 240 SGSSISRPSN GPGIIGNSLS RSHRSRQAQV DEQSLQNGKE GDDYLGESSP GFDVLVDNEL 300 SDYDYYQKED DVGRTTSHNG RHLTSVNEFD YDNCSVNHSS MNKFDREPYN NAREYDPYGR 360 SHDHYAWQQS RASSERVTER LSLPEQRGFT RSENPDQISE SDLRHQLSKQ RRVGGSRSAI 420 SSDRHGDHHW RVDHDHHIED QRNLSQSWRE SRHLPQAGSI SNRLRGRVTF PGRSSPDNNN 480 TNGMHPEREM DRGRKRGRLS PGRAPVLSYQ GRHQSRLKRK SEDLNMEERN CRAPLVKRDE 540 VGNSLDFAGP KSLAELKGAK VTESKEDHQQ GKDCQVFSVG EQRNSKIGKC VAQEYEDSLS 600 FESPKPLSMI LKRKRVVETA ASGNNEVSGM GDSDIQREGS ENHVGNSSIT TVAEIQTVLS 660 SDLKKEANES TVSNQENPIN SAALIDDEEG EIFPEDEEVA HEGESYAQDG SEVEIDDTME 720 DQELETFDKR DGESDYEQAD DDQDYRTEEV ENMDPEEEYL DDEDGDDFAK RISIMFSGER 780 ER

Sequence ? help Back to Top

Protein Sequence Length: 782 aa Download sequence Send to blast

MEVAARDSTQ PSATAEEEAL KKNTDCVYFL ASPLTCKKGS ECEYRHSEPA RINPRDCWFW  60
MNGNCLNPKC SFRHPPLDGL LGTSGASYVG SYMPAHTGAS TKILPLHAPA YSSAKQSIPC  120
IFFQKGLCLK GDRCPFTHGP QPTSNLPSQP PSPPPKVVLT TEPQDSNKAS FWGLEKFTKQ  180
QQIPRQNFVS QVEVPSSAKS VTKPEIALSK NGVPVKKSVP PITVSDDECL RYKPANGSGI  240
SGSSISRPSN GPGIIGNSLS RSHRSRQAQV DEQSLQNGKE GDDYLGESSP GFDVLVDNEL  300
SDYDYYQKED DVGRTTSHNG RHLTSVNEFD YDNCSVNHSS MNKFDREPYN NAREYDPYGR  360
SHDHYAWQQS RASSERVTER LSLPEQRGFT RSENPDQISE SDLRHQLSKQ RRVGGSRSAI  420
SSDRHGDHHW RVDHDHHIED QRNLSQSWRE SRHLPQAGSI SNRLRGRVTF PGRSSPDNNN  480
TNGMHPEREM DRGRKRGRLS PGRAPVLSYQ GRHQSRLKRK SEDLNMEERN CRAPLVKRDE  540
VGNSLDFAGP KSLAELKGAK VTESKEDHQQ GKDCQVFSVG EQRNSKIGKC VAQEYEDSLS  600
FESPKPLSMI LKRKRVVETA ASGNNEVSGM GDSDIQREGS ENHVGNSSIT TVAEIQTVLS  660
SDLKKEANES TVSNQENPIN SAALIDDEEG EIFPEDEEVA HEGESYAQDG SEVEIDDTME  720
DQELETFDKR DGESDYEQAD DDQDYRTEEV ENMDPEEEYL DDEDGDDFAK RISIMFSGER  780
ER

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010246006.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 17-like
TrEMBL	A0A1U7Z1S2	0.0	A0A1U7Z1S2_NELNU; zinc finger CCCH domain-containing protein 17-like
STRING	XP_010246006.1	0.0	(Nelumbo nucifera)