PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

NNU_024936-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

HD-ZIP

Protein Properties

Length: 173aa MW: 20039.8 Da PI: 9.8523

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_024936-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	57	3.3e-18	15	70	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +r++ +++++q++ Le+ F +++++ e++ +LA+ lgL rqV +W+qN+Ra++k NNU_024936-RA 15 KRNKKRLSQDQVRLLETSFSNEKKLEPERKIQLARDLGLHPRQVAIWYQNKRARWK 70 688999*************************************************9 PP
2	HD-ZIP_I/II	112.3	3.2e-36	17	108	2	93
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 +k+rls++qv+lLE+sF++e+kLeperK +lar+Lgl+prqva+W+qn+RAR+kt+ lE dy+aL+ ++++ ++++rLeke+ +Lr+el++ NNU_024936-RA 17 NKKRLSQDQVRLLETSFSNEKKLEPERKIQLARDLGLHPRQVAIWYQNKRARWKTQSLELDYKALQLKLESALADKRRLEKEMLRLRQELDK 108 79**************************************************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	17.038	12	72	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.14E-17	13	80	IPR009057	Homeodomain-like
SMART	SM00389	1.8E-16	14	76	IPR001356	Homeobox domain
Pfam	PF00046	1.9E-15	15	70	IPR001356	Homeobox domain
CDD	cd00086	8.25E-13	15	73	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.7E-18	16	79	IPR009057	Homeodomain-like
PRINTS	PR00031	3.7E-5	43	52	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	47	70	IPR017970	Homeobox, conserved site
PRINTS	PR00031	3.7E-5	52	68	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MDFFLQSENQ KSPPKRNKKR LSQDQVRLLE TSFSNEKKLE PERKIQLARD LGLHPRQVAI 60 WYQNKRARWK TQSLELDYKA LQLKLESALA DKRRLEKEML RLRQELDKAQ EMLMVSNSTP 120 PTALSSISTS CDEDGSSGLP RSSYWENSGV IQAEELYAFL MGADAQASKF KWS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	13	20	PKRNKKRL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010245574.1	1e-123	PREDICTED: homeobox-leucine zipper protein ATHB-52-like
TrEMBL	A0A1U7Z491	1e-122	A0A1U7Z491_NELNU; homeobox-leucine zipper protein ATHB-52-like
STRING	XP_010245574.1	1e-123	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G53980.1	3e-33	homeobox protein 52