PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_023005-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C3H
Protein Properties Length: 957aa    MW: 106636 Da    PI: 5.6773
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_023005-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH19.81.4e-06607627526
                    --SGGGGTS--TTTTT-SS-SS CS
        zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                     C+++++ G C+ Gd C+F+H+
  NNU_023005-RA 607 YCNHYLK-GRCQKGDLCRFSHD 627
                    6******.*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.309602629IPR000571Zinc finger, CCCH-type
SuperFamilySSF902299.42E-6602627IPR000571Zinc finger, CCCH-type
SMARTSM003560.0025603628IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.9E-4606627IPR000571Zinc finger, CCCH-type
PfamPF146082.2608626No hitNo description
SMARTSM003563.6E-4631657IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.277631658IPR000571Zinc finger, CCCH-type
PfamPF146080.006636655No hitNo description
SMARTSM003560.39659683IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6660685IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.9E-4661682IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.502661684IPR000571Zinc finger, CCCH-type
PfamPF146080.017661681No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 957 aa     Download sequence    Send to blast
MENRLEKTKL ETLKPPMHEG TPFVFPRHRR PLKSETFRTL VRILSHCLDE CESSPKLQIV  60
SPGSQAIELG QETQEVLHEL VDPDRREPEN LLIENTEIID TNDETFSTVV KDGVGRRMVV  120
EGNEDFVCDN VLKPTNVSTE KDLMVDDIPL VNDQSDPVVS EKIDIEKLGI IENDRHLNFE  180
VLGATNLSME NSPTTEKSVS VNSAQNKISS LENSVVDDIP FVSDQSDRVV SEEIVIDKLG  240
LIENDMHLNF EVLGASDLSV ENNLTTEKSV SIHSTQNKTS LEKCVVDDIP LVTDQSDPVV  300
SEEIAIEKLG LIENDRHLNF EVLGATNLSV ENSPTTEKSV SINSTQNKTS SLEKNMMEEL  360
QHEIQRKEPN LKTLVPSIAA VDTIDGFVAD REIEEGEISD DPEIPDQLID SVAEDAVFEM  420
QGKEEHVSAD ASEKEDFSNN SEKHARADGI DMPLTSYLEN TVDSMGNYNE ENFKEQKKLG  480
KEDSPNMMVN NRNGMVEQAY KDGSVLGGGT NKMKGDVTNG DSNYSVSNPD NFGLPEKIHE  540
KNITGNPGTS TEKDVKTDKK RKRSPLTQEK KAKKKLRSRK KRAEKNKLLG IKRLKIQPIS  600
KPKTVKYCNH YLKGRCQKGD LCRFSHDIIP LTKSQPCSYF ARNSCLKGDE CPFDHELSKY  660
PCNNYVSKGS CIRGDKCMFS HKVPPKEVLS LSKVDKTQSE PTHLPPDTNS KKQLNIKSTS  720
HHSLKDMDGK TNLGLPSSKR TLLQRNTQQN IVERNPKPLA LAPEGIHFLS VGKTPSDGSS  780
RNQEGDPPSK RIGDAKIWNW ENQVAPEKHQ SLNVMHRMTQ HAVTPKGISF LSIGKASSSD  840
FSKQQRDILP SKRDDGIESA TNKHESSNDM LLRVPACPLS KYQSNPLVDG NNKNTPNSAQ  900
KALLSTLAFA AKYESEMMER RHNGPTALSM ESGKNESMKA SKILEEFLFG IGSSSKQ
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1558563KKRKRS
2560581RKRSPLTQEKKAKKKLRSRKKR
3569581KKAKKKLRSRKKR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242241.10.0PREDICTED: uncharacterized protein LOC104586647
TrEMBLA0A1U7YWC30.0A0A1U7YWC3_NELNU; uncharacterized protein LOC104586647
STRINGXP_010242241.10.0(Nelumbo nucifera)