PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_023001-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 541aa    MW: 58867 Da    PI: 9.1001
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_023001-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.11.5e-0585107123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C+k F r  nL+ H r H
  NNU_023001-RA  85 FVCEICNKGFQRDQNLQLHRRGH 107
                    89*******************88 PP
2zf-C2H212.60.00041161183123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    +kC +C+k++  +s+ k H +t+
  NNU_023001-RA 161 WKCDKCSKRYAVQSDWKAHSKTC 183
                    58*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.9E-784107No hitNo description
Gene3DG3DSA:3.30.160.601.8E-584107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01785107IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.94985107IPR007087Zinc finger, C2H2
PROSITE patternPS00028087107IPR007087Zinc finger, C2H2
SMARTSM00355210126156IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.7E-4149182IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.9E-7156181No hitNo description
SMARTSM00355140161181IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 541 aa     Download sequence    Send to blast
MMKGLIIQQH PAVEENMSNL TSASGEASVS SGNRAETGTL YPQQSFASPN QTQVVKKKRN  60
LPGNPDPDAE VIALSPRTLM ATNRFVCEIC NKGFQRDQNL QLHRRGHNLP WKLKQRTSKE  120
VRKKVYVCPE PSCVHHDPSR ALGDLTGIKK HFCRKHGEKK WKCDKCSKRY AVQSDWKAHS  180
KTCGTREYRC DCGTLFSRRD SFITHRAFCD ALAEESARAA NTLLSTQPGP STSHINLQPQ  240
FNSHDLQAFS LKREQQQQQL HFNQRSEVPP WLACSSVVLG AGPGPPPIDL SSSIFSTRLD  300
QEFSRTQPST HQENFNSSPT PSLPPYHPLA SPHMSATALL QKAAQMGATM SKPSSSATLR  360
PHQAHMLAAN TGNATKSVPT TTTGFGLGLS SREEMESGFV HVMDAFANKA GFASSLIDSV  420
CATAGSGGPS LLQDMMNSFS STTGFDGSSF QDAFGMLSSK RNGNLNEALM KTTSSTTHIG  480
RNEGGGSHGG GVAGGNDGLT RDFLGLRAFS HRDILNIAGF DHCMTSSPYD QTIQNQKPWQ  540
G
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C7e-35157218364Zinc finger protein JACKDAW
5b3h_F7e-35157218364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1111123KLKQRTSKEVRKK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00206DAPTransfer from AT1G55110Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242234.10.0PREDICTED: protein indeterminate-domain 7-like isoform X1
SwissprotQ8H1F51e-124IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A1U7Z4G90.0A0A1U7Z4G9_NELNU; protein indeterminate-domain 7-like isoform X1
STRINGXP_010242234.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-126indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]