PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_022850-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family HD-ZIP
Protein Properties Length: 325aa    MW: 37122 Da    PI: 4.5339
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_022850-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85e-2086139356
                    --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
       Homeobox   3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                    k++++t++q++ Le+ Fe+++++  e++ +LA+ lgL+ rqV +WFqNrRa++k
  NNU_022850-RA  86 KKRRLTTDQVQFLEKSFEMENKLEPERKVQLARDLGLQPRQVAIWFQNRRARWK 139
                    56689************************************************9 PP
2HD-ZIP_I/II131.82.5e-4286175291
    HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                    kkrrl+++qv++LE+sFe+e+kLeperKv+lar+Lglqprqva+WFqnrRAR+ktkqlEkdyeaL+++y++lk++ ++L ke+e+L++e+
  NNU_022850-RA  86 KKRRLTTDQVQFLEKSFEMENKLEPERKVQLARDLGLQPRQVAIWFQNRRARWKTKQLEKDYEALRAKYNNLKADYDNLVKEKEKLKTEV 175
                    9**************************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.27E-2073143IPR009057Homeodomain-like
PROSITE profilePS5007117.39481141IPR001356Homeobox domain
SMARTSM003895.2E-1983145IPR001356Homeobox domain
CDDcd000868.45E-1884142No hitNo description
PfamPF000462.5E-1786139IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.605.7E-2088148IPR009057Homeodomain-like
PRINTSPR000311.0E-5112121IPR000047Helix-turn-helix motif
PROSITE patternPS000270116139IPR017970Homeobox, conserved site
PRINTSPR000311.0E-5121137IPR000047Helix-turn-helix motif
PfamPF021835.8E-16141182IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MAAGGRVYND SNMTVILQNE GIPCSSEALE TLLMSSSSPT FHGSSSMVSF EDVRRGKTPD  60
RSFFRPLEQQ DNGDEDLDEC FHQPGKKRRL TTDQVQFLEK SFEMENKLEP ERKVQLARDL  120
GLQPRQVAIW FQNRRARWKT KQLEKDYEAL RAKYNNLKAD YDNLVKEKEK LKTEVLSLTE  180
RLLLKEKEKG NSGTSDVNKP SDLQPQKPIP DSTSEERESE VPIVHVVCKQ EDISSANSDI  240
LDSESPHYTD AGHSSLLEPA DSSHIFEPDN SDLSQDEEDN LSRSLFPSVY YFPKLEDAVY  300
SDLPAHSCNY GFPSEDQALW FWSEL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133141RRARWKTKQ
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010242341.10.0PREDICTED: homeobox-leucine zipper protein HAT5
TrEMBLA0A1U7YT990.0A0A1U7YT99_NELNU; homeobox-leucine zipper protein HAT5
STRINGXP_010242341.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.13e-37homeobox 1