PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

NNU_022619-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 817aa MW: 90096.4 Da PI: 7.1433

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_022619-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.7	4.4e-05	157	178	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC +C++ F ++ n++rHir+H NNU_022619-RA 157 KCDKCSREFCSPINYRRHIRVH 178 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.432	156	178	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0098	156	178	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	158	178	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 817 aa Download sequence Send to blast
MRPEQKVGKP EEGSDSLDSF IRQAIGREPF LSFPRAGDSP VQWIQLLHAL DQQGTAKLSK 60 GPKFNDNIEG KERHLGHCNG VSMYTSESNG VKESIHPIKS SGIAVKGTKS ASENMQTLKI 120 PEAVVAFAQA AAKANGEPEK YLPGWPLLSP SKVPMQKCDK CSREFCSPIN YRRHIRVHRR 180 SLNIDKDSPK NRDILGAFWD KLSLDESKEL VSFKNVTLEE VPGSSIIRAL TSFIWKPVFS 240 SLPQAYVKAG SALLDIIQAR PSKFPLSSQE LFSILDDASE NTFLCAGTAD SMQKFVFDGE 300 AGKIGLEMKN LVACTSFLVE QKLCKEYMCL YFIRFVGGVV TYHLSQVKAW IADKDAEALR 360 CQKLLVEEEE AAQKRQAEIL EKRRLKKLRQ KEQKSKEQTS VEKTDFKESS PETWEDLPSA 420 ETTSPVDVSD SHPCTSGEQL DPIQPSLEPN QLLDTDLEAD TGSHAGFSDP DVEMASGNTS 480 SANYQNVYHE VQQESSRRQM NAARRQLPKQ LKGTSNGFHS GQIPPMSKVG AAPKHGSYRD 540 QRATSTVNGH KVWTRKTKCE NEEECSNVKE QREFLNQSDQ NGSNELLIGS ISVTLGDCSG 600 GCQGNILAAS VDQCTSDYQP PRRNNTQEKP IKLDVCHSST SRSMVKLWRP VGRQEGSMAV 660 QNETREAEMD VNSGEGTDRI LSNESCLVQG NIDDNSSESR NGSSKLWEES TDARGLRLFS 720 SRAAAAFLAQ RWKEAIAADH VKLVLFPKTG PPGSPEILDD AEVATALPSD CCKVNNLGNA 780 GVGPLEVSPT GPNKAKFRGK PEKVIKLKYI PKQRNGT

Sequence ? help Back to Top

Protein Sequence Length: 817 aa Download sequence Send to blast

MRPEQKVGKP EEGSDSLDSF IRQAIGREPF LSFPRAGDSP VQWIQLLHAL DQQGTAKLSK  60
GPKFNDNIEG KERHLGHCNG VSMYTSESNG VKESIHPIKS SGIAVKGTKS ASENMQTLKI  120
PEAVVAFAQA AAKANGEPEK YLPGWPLLSP SKVPMQKCDK CSREFCSPIN YRRHIRVHRR  180
SLNIDKDSPK NRDILGAFWD KLSLDESKEL VSFKNVTLEE VPGSSIIRAL TSFIWKPVFS  240
SLPQAYVKAG SALLDIIQAR PSKFPLSSQE LFSILDDASE NTFLCAGTAD SMQKFVFDGE  300
AGKIGLEMKN LVACTSFLVE QKLCKEYMCL YFIRFVGGVV TYHLSQVKAW IADKDAEALR  360
CQKLLVEEEE AAQKRQAEIL EKRRLKKLRQ KEQKSKEQTS VEKTDFKESS PETWEDLPSA  420
ETTSPVDVSD SHPCTSGEQL DPIQPSLEPN QLLDTDLEAD TGSHAGFSDP DVEMASGNTS  480
SANYQNVYHE VQQESSRRQM NAARRQLPKQ LKGTSNGFHS GQIPPMSKVG AAPKHGSYRD  540
QRATSTVNGH KVWTRKTKCE NEEECSNVKE QREFLNQSDQ NGSNELLIGS ISVTLGDCSG  600
GCQGNILAAS VDQCTSDYQP PRRNNTQEKP IKLDVCHSST SRSMVKLWRP VGRQEGSMAV  660
QNETREAEMD VNSGEGTDRI LSNESCLVQG NIDDNSSESR NGSSKLWEES TDARGLRLFS  720
SRAAAAFLAQ RWKEAIAADH VKLVLFPKTG PPGSPEILDD AEVATALPSD CCKVNNLGNA  780
GVGPLEVSPT GPNKAKFRGK PEKVIKLKYI PKQRNGT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	380	387	EKRRLKKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010241875.1	0.0	PREDICTED: uncharacterized protein LOC104586368 isoform X1
TrEMBL	A0A1U7YVH8	0.0	A0A1U7YVH8_NELNU; uncharacterized protein LOC104586368 isoform X1
STRING	XP_010241875.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-106	C2H2-like zinc finger protein