PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Publication

Basic Information? help Back to Top

TF ID

NNU_021882-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

bHLH

Protein Properties

Length: 308aa MW: 35190.9 Da PI: 8.4763

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_021882-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.6	5.4e-14	101	152	1	55
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +r++h ++Er+RR+++N+ ++ Lr+l+P++ + ++ + a+i+ A+e++k+L+ NNU_021882-RA 101 QRMTHIAVERNRRKQMNEHLAVLRSLMPES---YIQRGDQASIVGGAIEFVKELE 152 79**************************...9****************995 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	7.97E-14	99	156	No hit	No description
SuperFamily	SSF47459	5.89E-17	99	169	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.307	100	151	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-11	101	152	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-14	101	168	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.7E-10	106	157	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 308 aa Download sequence Send to blast
MALEALSSND LSNFNYDTIT SGFLPKNKIV SDGVGSNLHF DGFRPLELHP TFEGSSPMMR 60 RNPFASVATD GRSNSATTTQ GRRKRRRKPR VCKNKEEAET QRMTHIAVER NRRKQMNEHL 120 AVLRSLMPES YIQRGDQASI VGGAIEFVKE LEQLLQFLEV QKRQLLQQRE GPLDNNRSSS 180 NNYSNNFIDP PFVQFFTYPQ YSWCQAPREY PQDNRVAIAD IEVTLVETHA NLRVLTRWRP 240 RQLFKMVVGF QTLHLSILHL NVTTTLDSLV LYSFSAKVEE GCHLTSVDDI AGAVHHMLRI 300 IDEEATLA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	87	RRKRRRK
2	82	86	RKRRR
3	101	112	RMTHIAVERNRR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010240870.1	0.0	PREDICTED: transcription factor bHLH71-like
Swissprot	Q9C7T4	5e-68	BH096_ARATH; Transcription factor bHLH96
TrEMBL	A0A1U7Z186	0.0	A0A1U7Z186_NELNU; transcription factor bHLH71-like
STRING	XP_010240870.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72210.1	2e-61	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]