PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Function |

Basic Information? help Back to Top

TF ID

NNU_021200-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

GRAS

Protein Properties

Length: 683aa MW: 75837.7 Da PI: 5.7562

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_021200-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	422	5.1e-129	294	660	1	373
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 lv+ L++c+e + s++ ++++++Larl elasp+g++++R+aayfteALa r+ r +++++++ p+e +++++ +al+l+++vsPi+kf h+ NNU_021200-RA 294 LVSSLVACVESIGSKSIAAINHFLARLGELASPEGTSIHRVAAYFTEALALRVGRLWPHIFHIAVPRELG-RSEDDMGTALRLLNHVSPIPKFLHF 388 5789*************************************************************998.67899999************* PP GRAS 97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledlele 192 t N+++l+a+eg++rvHiiDfdi+qGlQWp+L+q+LasRp++p ++RiTg+g+ sk+el etg+rLa fA++l +pfef++ v++rled++l+ NNU_021200-RA 389 TSNEMLLRAFEGKDRVHIIDFDIKQGLQWPSLFQSLASRPNPPSHVRITGIGE----SKQELLETGDRLAGFADALSLPFEFHA-VVDRLEDVRLW 479 *************************************************....9**********************.7****** PP GRAS 193 eLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEre 288 +L+vk++E++aVn++lqlh++l ++ + +++L l++s++P+vvv+ eqea hn++s+ +r++++l+yysa+fds++++lp +s rikvE++ NNU_021200-RA 480 MLHVKEKESVAVNCILQLHKMLYDENGGA--LRDLLGLIRSTNPTVVVMGEQEAMHNEASLEARVCNSLRYYSAIFDSIDSSLPLDSLVRIKVEEM 573 *****************96655444..489********************************************************** PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve...eesgslvlgWkdrpLvsvSaW 373 +rei+n+vaceg++r erhe++++Wr +e+ GF+ v ++e++ q ++ll++++++ y+ve ee + l+l W ++pL++vSaW NNU_021200-RA 574 -YAREIRNIVACEGNDRLERHESFARWRGFMEHGGFRYVGIGERELLQSRMLLKMYAGEKYSVEkqgEEGAGLTLRWLEQPLYTVSAW 660 .89**************************************************9996655678889************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	59.395	268	638	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.8E-126	294	660	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 683 aa Download sequence Send to blast
MLAGCSTLLS PRHRLRSEAS AQFQACHFPL PSMSTQRLEL PCSFSRKDAQ RSQPIRPVSL 60 SVEKQVEAKG SCSLKQKLRL PPSITTAQTS YWEGRREVED RFWEKGKSLK RFAEQSSSDE 120 VCVSRAKRKK SSSSTTSPDD SSEGERLSVS QLGRDHFWFQ QTVGVPQSIL GITGLDPPSI 180 PFPVSSSEEE EKVCFVPSEV IVCPTLPLSN NNPWVEPVVT EITDKGDRDV EASQEPKEAS 240 SGSSSSESDS LSLRLNENFG RESGNGSQLP YPSERAGMSA GGEDVQAEHQ GFELVSSLVA 300 CVESIGSKSI AAINHFLARL GELASPEGTS IHRVAAYFTE ALALRVGRLW PHIFHIAVPR 360 ELGRSEDDMG TALRLLNHVS PIPKFLHFTS NEMLLRAFEG KDRVHIIDFD IKQGLQWPSL 420 FQSLASRPNP PSHVRITGIG ESKQELLETG DRLAGFADAL SLPFEFHAVV DRLEDVRLWM 480 LHVKEKESVA VNCILQLHKM LYDENGGALR DLLGLIRSTN PTVVVMGEQE AMHNEASLEA 540 RVCNSLRYYS AIFDSIDSSL PLDSLVRIKV EEMYAREIRN IVACEGNDRL ERHESFARWR 600 GFMEHGGFRY VGIGERELLQ SRMLLKMYAG EKYSVEKQGE EGAGLTLRWL EQPLYTVSAW 660 APVDVAGSSS LPQLELAQTA NIA

Sequence ? help Back to Top

Protein Sequence Length: 683 aa Download sequence Send to blast

MLAGCSTLLS PRHRLRSEAS AQFQACHFPL PSMSTQRLEL PCSFSRKDAQ RSQPIRPVSL  60
SVEKQVEAKG SCSLKQKLRL PPSITTAQTS YWEGRREVED RFWEKGKSLK RFAEQSSSDE  120
VCVSRAKRKK SSSSTTSPDD SSEGERLSVS QLGRDHFWFQ QTVGVPQSIL GITGLDPPSI  180
PFPVSSSEEE EKVCFVPSEV IVCPTLPLSN NNPWVEPVVT EITDKGDRDV EASQEPKEAS  240
SGSSSSESDS LSLRLNENFG RESGNGSQLP YPSERAGMSA GGEDVQAEHQ GFELVSSLVA  300
CVESIGSKSI AAINHFLARL GELASPEGTS IHRVAAYFTE ALALRVGRLW PHIFHIAVPR  360
ELGRSEDDMG TALRLLNHVS PIPKFLHFTS NEMLLRAFEG KDRVHIIDFD IKQGLQWPSL  420
FQSLASRPNP PSHVRITGIG ESKQELLETG DRLAGFADAL SLPFEFHAVV DRLEDVRLWM  480
LHVKEKESVA VNCILQLHKM LYDENGGALR DLLGLIRSTN PTVVVMGEQE AMHNEASLEA  540
RVCNSLRYYS AIFDSIDSSL PLDSLVRIKV EEMYAREIRN IVACEGNDRL ERHESFARWR  600
GFMEHGGFRY VGIGERELLQ SRMLLKMYAG EKYSVEKQGE EGAGLTLRWL EQPLYTVSAW  660
APVDVAGSSS LPQLELAQTA NIA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-69	301	662	26	380	Protein SCARECROW
5b3h_A	2e-69	301	662	25	379	Protein SCARECROW
5b3h_D	2e-69	301	662	25	379	Protein SCARECROW
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010278558.1	0.0	PREDICTED: scarecrow-like protein 28
Swissprot	Q9CAN3	0.0	SCL28_ARATH; Scarecrow-like protein 28
TrEMBL	A0A1U8BEY9	0.0	A0A1U8BEY9_NELNU; scarecrow-like protein 28
STRING	XP_010278558.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G63100.1	0.0	GRAS family protein