PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Basic Information? help Back to Top

TF ID

NNU_021128-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C2H2

Protein Properties

Length: 727aa MW: 79219.9 Da PI: 4.5077

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_021128-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	11.8	0.00077	21	43	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cg +F++++ +H r H NNU_021128-RA 21 FRCHRCGWPFPNQHPSAKHRRAH 43 89*****************9998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	8.933	21	43	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	23	43	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 727 aa Download sequence Send to blast
MDGEAHTQIH PPENENENHV FRCHRCGWPF PNQHPSAKHR RAHKKVCGTL DGYRLSESER 60 GDPESPTNTW SLKQCDPIES NENKDAGTEE DEFGDAVAES TNTVAALATA SIEVEAATEP 120 VEASGNNTEF LPIEALVITE DASGCTSALS PTIASSESNI QPVKIVMDNS KVCIGQETYN 180 LQNEDSERVN LINNSVKVGD TEGEVGVKSD YEGSEVSEYP FKDIPATSVP GGSTAPLHIE 240 KLKIAEDEKS CYSSTSPTQF EAPKAGLGKT VEDQNEKGEV NEDPLVEIGS AYETVECQNV 300 KAEASEYPSK DITSTSISSN STDSLLVETM EVTKDEKSCD SAMSPIKIET PRATPNETVE 360 GQNEKTKVNT YLHADALNFN STVSLLVEKL EITKDEKSCD LVRSPIEFEA PRAAPNETPE 420 GQNEKAEANE LSLADTSDFS GSLAASRATN MALEGSKDPM KLDIPLTSGN GELIEEKGNH 480 NNDSIFKETH SCQLVSKKDE GFDVTSSAEQ ALKENLQQER GIADTVKDLC VVQKTDGSES 540 KATTNELNNS VKKFDGGDPT NDNSVILQNG NDNNLLKHQF GSFDVAACRL GSMPNRTLAS 600 TRDAMEEMNT PVQAQKANQK NIGTSIEHHN EMDIFEPPSF MTLVEPTKAN YQKNIASGWF 660 PSLNHIEHET KGRKKNEHII TEVTKSTGKP HGTLKNLLTE AKVKKYHKYS QDKQNTGTGS 720 DGRTNKV

Sequence ? help Back to Top

Protein Sequence Length: 727 aa Download sequence Send to blast

MDGEAHTQIH PPENENENHV FRCHRCGWPF PNQHPSAKHR RAHKKVCGTL DGYRLSESER  60
GDPESPTNTW SLKQCDPIES NENKDAGTEE DEFGDAVAES TNTVAALATA SIEVEAATEP  120
VEASGNNTEF LPIEALVITE DASGCTSALS PTIASSESNI QPVKIVMDNS KVCIGQETYN  180
LQNEDSERVN LINNSVKVGD TEGEVGVKSD YEGSEVSEYP FKDIPATSVP GGSTAPLHIE  240
KLKIAEDEKS CYSSTSPTQF EAPKAGLGKT VEDQNEKGEV NEDPLVEIGS AYETVECQNV  300
KAEASEYPSK DITSTSISSN STDSLLVETM EVTKDEKSCD SAMSPIKIET PRATPNETVE  360
GQNEKTKVNT YLHADALNFN STVSLLVEKL EITKDEKSCD LVRSPIEFEA PRAAPNETPE  420
GQNEKAEANE LSLADTSDFS GSLAASRATN MALEGSKDPM KLDIPLTSGN GELIEEKGNH  480
NNDSIFKETH SCQLVSKKDE GFDVTSSAEQ ALKENLQQER GIADTVKDLC VVQKTDGSES  540
KATTNELNNS VKKFDGGDPT NDNSVILQNG NDNNLLKHQF GSFDVAACRL GSMPNRTLAS  600
TRDAMEEMNT PVQAQKANQK NIGTSIEHHN EMDIFEPPSF MTLVEPTKAN YQKNIASGWF  660
PSLNHIEHET KGRKKNEHII TEVTKSTGKP HGTLKNLLTE AKVKKYHKYS QDKQNTGTGS  720
DGRTNKV

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010278450.1	0.0	PREDICTED: uncharacterized protein LOC104612643
TrEMBL	A0A1U8BN11	0.0	A0A1U8BN11_NELNU; uncharacterized protein LOC104612643
STRING	XP_010278450.1	0.0	(Nelumbo nucifera)