PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_020061-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family BBR-BPC
Protein Properties Length: 428aa    MW: 47142.7 Da    PI: 9.8551
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_020061-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind250.61e-76115279130296
      GAGA_bind 130 eklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestlPvPvCsCtGalrqCYkW 225
                     ++++ +  ++ +++++++ + k+++    k+ + k++kkk+++s+kk++++   +++k+ekk +d+v++g ++D s++P+P+CsCtG+ rqCY+W
  NNU_020061-RA 115 GQTQSSEFGTKSSKIRKQQPSAKKSNRVASKVLRPKQPKKKPSVSTKKKNNSI--STVKHEKKILDIVIDGTTIDFSQMPAPICSCTGVARQCYRW 208
                    55566666677777777777777777788899999999998888866666555..78*************************************** PP

      GAGA_bind 226 GnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnk 296
                    G+GGWqS+CCtt+iS yPLP+st+r+gaR+agrKmS+ga+ klL++La+eGydls+pvDLkdhWA+HGtnk
  NNU_020061-RA 209 GAGGWQSSCCTTSISEYPLPMSTTRPGARMAGRKMSNGAYAKLLQRLASEGYDLSHPVDLKDHWARHGTNK 279
                    **********************************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012267.5E-871279IPR010409GAGA-binding transcriptional activator
PfamPF062171.1E-731279IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MDEKGGLGIR NWNFSEQSVG VDAVLKPVSG VQVPGGTSGH QTAFLKMGAY GNRNSMIPHA  60
DAGASAMEYA GHCWVHPRNF LPVNKASPSP LQAIPLNTDG GIPVVPTGMG VPTDGQTQSS  120
EFGTKSSKIR KQQPSAKKSN RVASKVLRPK QPKKKPSVST KKKNNSISTV KHEKKILDIV  180
IDGTTIDFSQ MPAPICSCTG VARQCYRWGA GGWQSSCCTT SISEYPLPMS TTRPGARMAG  240
RKMSNGAYAK LLQRLASEGY DLSHPVDLKD HWARHGTNKC AYVDWISRPR HALGISEILT  300
SVVLGEGVPI FVESGYIKSP WNAINNLENS NQFIQGRLKS RTIESFGKKE KSYLRLCPRS  360
AMSLCNSIWS EQRKWTSTNR YAQHFRMGCC ISYLNFPCKL DLIADIQVDT EVQEFPYTRI  420
EPSNQEDN
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010276763.10.0PREDICTED: protein BASIC PENTACYSTEINE7-like
RefseqXP_010276764.10.0PREDICTED: protein BASIC PENTACYSTEINE7-like
RefseqXP_010276765.10.0PREDICTED: protein BASIC PENTACYSTEINE7-like
TrEMBLA0A1U8BID10.0A0A1U8BID1_NELNU; protein BASIC PENTACYSTEINE7-like
STRINGXP_010276763.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35550.42e-59basic pentacysteine 7