PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Publication

Basic Information? help Back to Top

TF ID

NNU_019664-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

C3H

Protein Properties

Length: 146aa MW: 16312.5 Da PI: 8.7094

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_019664-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	31.1	4.1e-10	53	79	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 y+ C++f+rtG+C++Gd+Ck+ H++ NNU_019664-RA 53 YGKGVCNHFMRTGFCQFGDSCKYFHPK 79 56668********************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00451	7.5E-5	3	38	IPR003604	Zinc finger, U1-type
SuperFamily	SSF57667	9.44E-18	4	61	No hit	No description
Pfam	PF06220	1.2E-11	5	37	IPR013085	Zinc finger, U1-C type
SMART	SM00356	3.2E-4	52	79	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	15.065	52	80	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	7.46E-8	53	81	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.2E-8	53	79	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.1E-7	57	80	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MPLAKYYCDY CDKQFQDTPS ARKRHLQGVQ HQRARALWYD SLRDPSLVQA EGYGKGVCNH 60 FMRTGFCQFG DSCKYFHPKQ NIQSPATNFK ENVQLPYILG NQPVVGSSIP GVVIREGAGL 120 SLGNLPPSLR PPPEGGYPPL PFVDWG

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010276516.1	1e-106	PREDICTED: zinc finger CCCH domain-containing protein 3 isoform X2
Swissprot	Q0JP11	8e-52	C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3
TrEMBL	A0A1U8BHQ8	1e-105	A0A1U8BHQ8_NELNU; zinc finger CCCH domain-containing protein 3 isoform X2
STRING	XP_010276515.1	1e-102	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G26749.1	6e-32	C3H family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]