PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

NNU_019425-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

HD-ZIP

Protein Properties

Length: 758aa MW: 82464.8 Da PI: 5.7728

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_019425-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.7	1.1e-19	90	145	1	56
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t+ q++e+e++F+++++p+ ++r+eL+++lgL+ qVk+WFqN+R+++k NNU_019425-RA 90 KKRYHRHTQLQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMK 145 688999***********************************************999 PP
2	START	222.7	1.1e-69	284	504	1	206
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEE CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetle 83 ela +a++el+++a+++ep+Wv s e++ +de+++ f+++ + +++ea+r+++vv+m++ +lve+l+d++ qW+ + +a+tle NNU_019425-RA 284 ELAVAAMEELIRMAQLGEPLWVPSLdnatEILSEDEYIRVFPRGIGpkpaaFNTEASRETAVVIMNHINLVEILMDVN-QWSSVFSsivsRAMTLE 378 57899************************************999****************************.************* PP EECTT......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE- CS START 84 vissg......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksnghskvtwvehvdl 172 v+s+g galq+m+ae+q++splvp R+++fvRy++q+ +g+w++vdvS+d+ ++ p v R++++pSg+li++++ng+skvtwvehv++ NNU_019425-RA 379 VLSTGvagnynGALQVMTAEFQVPSPLVPtRESYFVRYCKQHAEGTWAVVDVSLDHLRPGP----VLRCRRRPSGCLIQEMPNGYSKVTWVEHVEV 470 ********************************************************9....7************************** PP -SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXXX CS START 173 kgrlphwllrslvksglaegaktwvatlqrqcek 206 ++r +h+++r lv+ +la+gak+wvatl+rqce+ NNU_019425-RA 471 DDRAVHSIYRGLVSCCLAFGAKRWVATLDRQCER 504 ******************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.3E-21	73	145	IPR009057	Homeodomain-like
SuperFamily	SSF46689	2.3E-19	77	147	IPR009057	Homeodomain-like
PROSITE profile	PS50071	16.714	87	147	IPR001356	Homeobox domain
SMART	SM00389	6.4E-19	88	151	IPR001356	Homeobox domain
CDD	cd00086	8.51E-19	89	148	No hit	No description
Pfam	PF00046	4.4E-17	90	145	IPR001356	Homeobox domain
PROSITE pattern	PS00027	0	122	145	IPR017970	Homeobox, conserved site
PROSITE profile	PS50848	46.117	275	507	IPR002913	START domain
SuperFamily	SSF55961	1.33E-37	277	506	No hit	No description
CDD	cd08875	3.28E-130	279	503	No hit	No description
SMART	SM00234	2.2E-65	284	504	IPR002913	START domain
Pfam	PF01852	4.3E-58	285	504	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	3.5E-5	378	471	IPR023393	START-like domain
SuperFamily	SSF55961	1.1E-25	524	750	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0008289	Molecular Function	lipid binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 758 aa Download sequence Send to blast
MPAGIMIPPG HVPPMMGRNG KITGFGSSSG LTLGQPNMLD GQQHQLEMSQ NTPESEMAKI 60 RDDEFESKSG SENIEGASGD DQDPNQRPRK KRYHRHTQLQ IQEMEAFFKE CPHPDDKQRK 120 ELSRELGLEP LQVKFWFQNK RTQMKTQHER QENAQLRADN EKLRTENLRY KEALSNASCP 180 NCGGPTAIGE MSFDEHQLRL ENARLREEID RISGIAAKYV GKPLVSYPLM SPSIPPRSLD 240 LGVGNFGAQP GLGVGGGGEM YGAAGDLLRS VSGHSEADKP MIIELAVAAM EELIRMAQLG 300 EPLWVPSLDN ATEILSEDEY IRVFPRGIGP KPAAFNTEAS RETAVVIMNH INLVEILMDV 360 NQWSSVFSSI VSRAMTLEVL STGVAGNYNG ALQVMTAEFQ VPSPLVPTRE SYFVRYCKQH 420 AEGTWAVVDV SLDHLRPGPV LRCRRRPSGC LIQEMPNGYS KVTWVEHVEV DDRAVHSIYR 480 GLVSCCLAFG AKRWVATLDR QCERLASVMA SNIPAGDIGV ITSPDGRKSM LKLAERMVVS 540 FCAGVSASTA HTWTTLSGSG AEDVRVMTRK SIDDPGRPPG IVLSAATSFW LPVPPKKVFD 600 FLRDENSRSE WDILSNGGVV QEMAHIANGR DPGNCVSLLR VNSANSSQSN MLILQESCTD 660 STGSLVIYAP VDVVAMNVVL NGGDPDYVAL LPSGFAILPD GAPVQSGVHC GSLLTVAFQI 720 LVDSVPTAKL SLGSVATVNS LIACTVERIK AAVSCEST

Sequence ? help Back to Top

Protein Sequence Length: 758 aa Download sequence Send to blast

MPAGIMIPPG HVPPMMGRNG KITGFGSSSG LTLGQPNMLD GQQHQLEMSQ NTPESEMAKI  60
RDDEFESKSG SENIEGASGD DQDPNQRPRK KRYHRHTQLQ IQEMEAFFKE CPHPDDKQRK  120
ELSRELGLEP LQVKFWFQNK RTQMKTQHER QENAQLRADN EKLRTENLRY KEALSNASCP  180
NCGGPTAIGE MSFDEHQLRL ENARLREEID RISGIAAKYV GKPLVSYPLM SPSIPPRSLD  240
LGVGNFGAQP GLGVGGGGEM YGAAGDLLRS VSGHSEADKP MIIELAVAAM EELIRMAQLG  300
EPLWVPSLDN ATEILSEDEY IRVFPRGIGP KPAAFNTEAS RETAVVIMNH INLVEILMDV  360
NQWSSVFSSI VSRAMTLEVL STGVAGNYNG ALQVMTAEFQ VPSPLVPTRE SYFVRYCKQH  420
AEGTWAVVDV SLDHLRPGPV LRCRRRPSGC LIQEMPNGYS KVTWVEHVEV DDRAVHSIYR  480
GLVSCCLAFG AKRWVATLDR QCERLASVMA SNIPAGDIGV ITSPDGRKSM LKLAERMVVS  540
FCAGVSASTA HTWTTLSGSG AEDVRVMTRK SIDDPGRPPG IVLSAATSFW LPVPPKKVFD  600
FLRDENSRSE WDILSNGGVV QEMAHIANGR DPGNCVSLLR VNSANSSQSN MLILQESCTD  660
STGSLVIYAP VDVVAMNVVL NGGDPDYVAL LPSGFAILPD GAPVQSGVHC GSLLTVAFQI  720
LVDSVPTAKL SLGSVATVNS LIACTVERIK AAVSCEST

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010275996.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG2-like
Refseq	XP_010275997.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG2-like
Swissprot	Q0J9X2	0.0	ROC2_ORYSJ; Homeobox-leucine zipper protein ROC2
TrEMBL	A0A1U8BGH7	0.0	A0A1U8BGH7_NELNU; homeobox-leucine zipper protein HDG2-like
STRING	XP_010275996.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05230.4	0.0	homeodomain GLABROUS 2

Publications ? help Back to Top
Chou IT,Gasser CS Characterization of the cyclophilin gene family of Arabidopsis thaliana and phylogenetic analysis of known cyclophilin proteins. Plant Mol. Biol., 1997. 35(6): p. 873-92 [PMID:9426607]