PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

3D Structure |

Gene Ontology |

Basic Information? help Back to Top

TF ID

NNU_018790-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB_related

Protein Properties

Length: 272aa MW: 30828.4 Da PI: 8.0319

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_018790-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	49.2	1.2e-15	16	63	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd ll ++++++G g W +++ + g++R++k+c++rw++yl NNU_018790-RA 16 KGAWTKEEDILLRKCIERYGEGKWCLVPLRAGLNRCRKSCRLRWLNYL 63 79********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.381	13	67	IPR017930	Myb domain
SuperFamily	SSF46689	5.35E-21	13	102	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	3.1E-20	14	66	IPR009057	Homeodomain-like
SMART	SM00717	8.5E-14	15	65	IPR001005	SANT/Myb domain
Pfam	PF00249	7.9E-15	16	63	IPR001005	SANT/Myb domain
CDD	cd00167	4.55E-11	18	63	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.6E-11	67	110	IPR009057	Homeodomain-like
PROSITE profile	PS51294	10.28	68	111	IPR017930	Myb domain
SMART	SM00717	2.5E-4	68	109	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 272 aa Download sequence Send to blast
MTRTCEVMDG FLGLRKGAWT KEEDILLRKC IERYGEGKWC LVPLRAGLNR CRKSCRLRWL 60 NYLRSDIKRG KFTLDEVDLI IRLHKLLGNR LPGRTANDIK NYCNTRLSKK KLVSKEEKKA 120 NTTVEKIKAI RPQPRTFTKS SRWFRPLXDP TSEGATSQSG EILSKAXPDN STTVGTNNRS 180 GEMPNETSPD LPPPTNDLVQ WWKSVLDESD MVDTTCPIIS GSEEDSLAVE VQPAMTGFGN 240 IYEEIXSTTD EGDHLSFSKN IWDLLASDMD II

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	4e-17	10	110	1	107	B-MYB

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010274761.1	1e-138	PREDICTED: myb-related protein 330-like
TrEMBL	A0A1U8B239	1e-136	A0A1U8B239_NELNU; myb-related protein 330-like
STRING	XP_010274762.1	0.0	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	9e-50	myb domain protein 113