PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Publication

Basic Information? help Back to Top

TF ID

NNU_018785-RA

Organism

Nelumbo nucifera

Taxonomic ID

4432

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB_related

Protein Properties

Length: 92aa MW: 10839.7 Da PI: 10.817

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_018785-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	45.5	1.7e-14	19	66	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+e d ll + ++++G g W +++ + g++R++k+c++rw++yl NNU_018785-RA 19 KGKWTEEKDILLRKFIERYGEGKWCKVPLRAGLNRCRKSCRLRWLNYL 66 79*********************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	21.513	14	70	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-20	16	69	IPR009057	Homeodomain-like
SMART	SM00717	1.8E-11	18	68	IPR001005	SANT/Myb domain
Pfam	PF00249	8.1E-14	19	66	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	8.97E-20	20	92	IPR009057	Homeodomain-like
CDD	cd00167	1.78E-9	21	66	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.3E-6	70	92	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 92 aa Download sequence Send to blast
MQSKTRSSEV MDGGLGLRKG KWTEEKDILL RKFIERYGEG KWCKVPLRAG LNRCRKSCRL 60 RWLNYLRPGI KRGEFTSDEV DLIIRFHKLL GN

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269\|PubMed:15361138}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010274761.1	1e-49	PREDICTED: myb-related protein 330-like
Swissprot	Q9FNV9	1e-37	MY113_ARATH; Transcription factor MYB113
TrEMBL	A0A1L2BPG0	8e-49	A0A1L2BPG0_NELNU; MYB transcription factor 5 (Fragment)
TrEMBL	A0A1L2BPH7	1e-48	A0A1L2BPH7_NELNU; MYB transcription factor 5 (Fragment)
TrEMBL	A0A1U8B239	3e-48	A0A1U8B239_NELNU; myb-related protein 330-like
STRING	XP_010274761.1	4e-49	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66370.1	5e-40	myb domain protein 113

Publications ? help Back to Top
Li T, et al. Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis. Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83 [PMID:25450360] Mondal SK,Roy S Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis. J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601 [PMID:28490275]