PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo

Family

MYB_related

Protein Properties

Length: 127aa MW: 13942.8 Da PI: 4.5035

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
NNU_017971-RA	genome	CAS	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	23.1	1.8e-07	8	55	3	46
SS-HHHHHHHHHHHHHTTTT.....-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg.....tWktIartmgkgRtlkqcksrwqk 46 W+ e+++ + a+ ++ +W+ Ia++++ +t ++k ++ NNU_017971-RA 8 GWSREDEKAFETAIVMHWATndskdRWENIASMVP-SKTVAELKKHYEV 55 6**************9999**********.********965 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	9.415	1	61	IPR017884	SANT domain
SMART	SM00717	2.1E-5	5	59	IPR001005	SANT/Myb domain
Pfam	PF00249	1.7E-5	7	54	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	7.34E-10	8	64	IPR009057	Homeodomain-like
CDD	cd00167	5.56E-8	9	57	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 127 aa Download sequence Send to blast
MNMASVGGWS REDEKAFETA IVMHWATNDS KDRWENIASM VPSKTVAELK KHYEVLVEDV 60 DAIELGQIPI PTYVKEEVAS SKDQLLFLVF ASGAVDKRLN CNFGTRFSGL GTDSGGVDIG 120 LNSCEVK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	1e-16	3	73	1	73	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269\|PubMed:26243618}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:26243618}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010271092.1	6e-69	PREDICTED: protein RADIALIS-like 4
Swissprot	Q9FNN6	2e-16	SRM1_ARATH; Transcription factor SRM1
TrEMBL	A0A1U8B4Q0	1e-67	A0A1U8B4Q0_NELNU; protein RADIALIS-like 4
STRING	XP_010271092.1	2e-68	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G49010.1	1e-22	MYB family protein

Publications ? help Back to Top
Wang T, et al. Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis. Plant Physiol., 2015. 169(2): p. 1027-41 [PMID:26243618] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313]