PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_017608-RA
Organism
Nelumbo nucifera
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 411aa    MW: 44881.1 Da    PI: 8.9295
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_017608-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.5e-06175197223
                    EETTTTEEESSHHHHHHHHHH.T CS
        zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                    +Cp Cg+ F+  +nL+ H+ + H
  NNU_017608-RA 175 SCPECGEIFTKAENLEAHQAVrH 197
                    8******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.3E-4174193IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.681174202IPR007087Zinc finger, C2H2
PROSITE patternPS000280174197IPR007087Zinc finger, C2H2
SuperFamilySSF563991.06E-25199410No hitNo description
Gene3DG3DSA:3.90.228.101.9E-18200409IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MAETENPRKP SKKTHQDQNL QSQKPTEKPP PWAVVRSLFT CKHLQPVEQQ AVEGNGKKHK  60
KMKCSGSLCN NTKVMQRPES SSPEDCKKWA SICSSTTTAS SRSLKVPLNE INGAVPTPSS  120
SSSSSSSLLS SGSSVGGSFR SMPLRRLSGC YECRAVVDPI SGVPKDPALR TTACSCPECG  180
EIFTKAENLE AHQAVRHAVS ELGPEDTSRN IVEIIFQSSW LKKQASVCKV DRILKVHNSQ  240
KTITRFEDYR ESIKAKASKL AKKHPRCVAD GNELLRFHCT TFVCSIGMNG SSNLCNSIPQ  300
CNVCSIIRNG FKIPAGDAGS AICTTATSGK AHDNAQIKTD DDKRAMLVCR VIAGRVKRTQ  360
DTNSEEIMNQ KNSEEFDSVA GPTGIYSNLD ELYVFNPKAI LPCFVVIYRG F
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010272869.10.0PREDICTED: uncharacterized protein LOC104608536
TrEMBLA0A1U8B9X50.0A0A1U8B9X5_NELNU; uncharacterized protein LOC104608536
STRINGXP_010272869.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75710.14e-99C2H2-like zinc finger protein